[gmx-users] Distance issue

[Navneet Chaturvedi]

Dear Scientists

My system contains Protein+ZN+ions+water. Box size from protein surface is
1.0nm. After production MD of 50ns, when I calculate the distance (g_dist)
from one Zn ions to a particular Amino Acid residue, then I got huge
distances more than 5nm (even more) somewhere in plot. How it is possible
the distances more than box size.

I am new in the field, so could anyone make some light on it. Is it PBC
problem?

Thank you

-- 
*Your Sincerely*

*Navaneet Chaturvedi*
Dr Gali Prag
Department of Biochemistry & Mol Biology, Sherman Building
Tel Aviv University, Tel Aviv 69978
Israel
Email: navaneettau at post.tau.ac.il
Contact (Israel): +972 (0) 547387142
             (India):  +91 9451067728
Skype: navneetonskype1