[gmx-users] Question about editconf -noc flag

[James Lord]

Hi all,
I have made an oil slab (energy minimized, equilibrated nvt and npt), some
of the oil molecules are at the other end (periodicity).
https://drive.google.com/open?id=0B0YMTXH1gmQsYmdvQ3huYWtDaGs

then I decided to increase the box size in z direction a bit to make enough
room for protein, using

editconf -f OCT_npt.gro -oOCT_newbox.gro -box  6.47271 6.47271 16 -noc

https://drive.google.com/file/d/0B0YMTXH1gmQsYmdvQ3huYWtDaGs/view?usp=sharing
I used the last flag to put the oil at the ends of box but it is not doing
for one end? any thoughts?
Cheers
James