[gmx-users] joining line in rms

[Debajyoti Dutta]

Hi all,

I have been running a dimer in simulation in GROMACS opls/aa, after that I am getting a joining line in the rms fluctuation.

anyone please help me for that. chains are separated by A and B nomenclature

Please find the plot in the following link

https://drive.google.com/file/d/0B7TB1kZSaF9zRFd0R0djbmhQLTg/view?usp=sharing


Thanks in advance

Debajyoti