[gmx-users] System Problem

[Mark Abraham]

On Sun, Jun 28, 2015 at 1:20 PM su <sun.iba2 at gmail.com> wrote:

> Hello everyone
> I am using Gromacs 5.0 for running a tutorial. The tutorial is
> successfully done and i have obtained .gro file. I am a beginner and do not
> have idea how to visualize this file in pymol? can anyone help in this
> regard?


Google knows rather better than anyone where beginner tutorials on PyMol
might be found :-)


> Secondly, this may be a partition problem but if anyone knows, After doing
> one simulation, i shut down my system. When i started it next day, It again
> failed to run pdb2gmx command while it was used successfully in previous
> tutorial. Why is this happening?
>

Unfortunately, with this information we can't tell between the hundred
things you might have done differently. Do exactly what you did yesterday
(in particular, remember to source GMXRC)...

Mark


> Regardd
> Suniba
> Ph.D. candidate
> Computational Biochemistry
>
> Sent from my iPhone
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