[gmx-users] System Problem

[su]

Allright Thank you very much Mark.
Regards
Suniba

Sent from my iPhone

> On 28-Jun-2015, at 5:07 pm, Mark Abraham <mark.j.abraham at gmail.com> wrote:
> 
>> On Sun, Jun 28, 2015 at 1:20 PM su <sun.iba2 at gmail.com> wrote:
>> 
>> Hello everyone
>> I am using Gromacs 5.0 for running a tutorial. The tutorial is
>> successfully done and i have obtained .gro file. I am a beginner and do not
>> have idea how to visualize this file in pymol? can anyone help in this
>> regard?
> 
> 
> Google knows rather better than anyone where beginner tutorials on PyMol
> might be found :-)
> 
> 
>> Secondly, this may be a partition problem but if anyone knows, After doing
>> one simulation, i shut down my system. When i started it next day, It again
>> failed to run pdb2gmx command while it was used successfully in previous
>> tutorial. Why is this happening?
> 
> Unfortunately, with this information we can't tell between the hundred
> things you might have done differently. Do exactly what you did yesterday
> (in particular, remember to source GMXRC)...
> 
> Mark
> 
> 
>> Regardd
>> Suniba
>> Ph.D. candidate
>> Computational Biochemistry
>> 
>> Sent from my iPhone
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