[gmx-users] query regarding coarse grained simulation of a peripheral membrane protein

[Tsjerk Wassenaar]

Hi Antara,

You should already have a topology file for your protein. Add the lipids to
it.
You don't state which force field you use, but if it's Martini, then you
need to include the martini lipid topology file. Then, if you built the
membrane with insane, it will have printed the lines to add at the end of
the topology, listing the lipid types and numbers.

Hope it helps,

Tsjerk

On Fri, Mar 13, 2015 at 1:14 PM, Antara mazumdar <antara.mazumdar at igib.in>
wrote:

> ​Hi,
> How do i generate a topology file of a peripherally attached dimeric
> protein with a homogenous lipid bilayer using coarse grained approach? ​i
> have concatenated the coarse grained structure of lipids and protein prior
> to this.
>
> --
>
> *Best,*
> *Antara*
>
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-- 
Tsjerk A. Wassenaar, Ph.D.