[gmx-users] error in grompp : No such molecule type Protein

[Justin Lemkul]

On 3/16/15 6:35 AM, Antara mazumdar wrote:
> Hi,
> I am trying to minimise a coarse grained system having DOPC lipid bilayer,
> a dimeric protein and water. The mdp file has DOPC, Protein and W as
> coupling groups and my topology file also mentions the number of each
> correctly. However while running grompp i am getting "No such molecule type
> Protein" error.
>

Either the [moleculetype] name is not "Protein" or you've broken the topology 
format somehow such that it cannot be correctly parsed.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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