[gmx-users] DNA-protein complex

[Marcelo Depólo]

2015-03-17 14:35 GMT-03:00 Urszula Uciechowska <
urszula.uciechowska at biotech.ug.edu.pl>:

>
>
> Hi,
>
> I am running MD for dsDNA-protein complex. After 50ns I observed that the
> DNA is unwinding. What did go wrong? Should I have changed something in my
> input file?
>
> You might want to send your input files, so as your force field that you
have choose. It is hard to say anything without more details.
Also, what do you mean by 'unwinding'? Could you be more specific?


> Thank you in advance for your suggestions.
> best regards
> Urszula
>

Cheers!
-- 
Marcelo Depólo Polêto
B.Sc. Biochemistry - University of Viçosa (Brazil)