[gmx-users] How to build up a nafion PDB

[soumadwip ghosh]

Dear all,

           I want to simulate nafion oligomers in explicit water. Is there
any tool or any software where I can build a short nafion residue? How
consistent will be the bond length/angle parameters with respect to the
employed force field? I am quite new in the filed of molecular dynamics and
hope I am not asking for much...:)


Regards,
Soumadwip Ghosh
Research Fellow,
IIT Bombay,
India