[gmx-users] forcefield error for atoms

Justin Lemkul jalemkul at vt.edu
Mon Mar 23 04:06:56 CET 2015



On 3/22/15 2:11 PM, mah maz wrote:
> Dear all,
> I need to insert some atoms (without any bonds to other atoms) or even ions
> in my system. I have created the .pdb, and .gro files, but when I try to
> generate the .top file it stops with the following error: " forcefield not
> found for atoms with 0 bonds". Is there a way to solve this problem?
> Thanks!
>

You'll need to provide exact commands.  This looks like a g_x2top error, but it 
doesn't make sense why you would be using it in this case.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

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