[gmx-users] TER cards in gromacs

[Urszula Uciechowska]

Hi
I have a DNA-proteins complex that consists of 3 protein receptors and one
DNA molecule. I want the receptors to be non-bonded, in AMBER I used TER
cards what should I use in GROMACS?
I tried to load pdb with TER cards between the receptors however after
running pdb2gmx and then editconf I obtained a complex with bonded
receptors. What should I do?

best regards
Urszula Uciechowska



University of Gdansk and Medical Univesity of Gdansk
Department of Molecular and Cellular Biology
ul. Kladki 24
80-822 Gdansk
Poland


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http://www.ug.edu.pl/