[gmx-users] TER cards in gromacs

[Mark Abraham]

Hi,

Please see pdb2gmx -h regarding -chainsep

Mark

On Wed, May 6, 2015 at 10:32 AM Urszula Uciechowska <
urszula.uciechowska at biotech.ug.edu.pl> wrote:

>
> Hi
> I have a DNA-proteins complex that consists of 3 protein receptors and one
> DNA molecule. I want the receptors to be non-bonded, in AMBER I used TER
> cards what should I use in GROMACS?
> I tried to load pdb with TER cards between the receptors however after
> running pdb2gmx and then editconf I obtained a complex with bonded
> receptors. What should I do?
>
> best regards
> Urszula Uciechowska
>
>
>
> University of Gdansk and Medical Univesity of Gdansk
> Department of Molecular and Cellular Biology
> ul. Kladki 24
> 80-822 Gdansk
> Poland
>
>
> -----------------------------------------
> Ta wiadomość została wysłana z serwera Uniwersytetu Gdańskiego
> http://www.ug.edu.pl/
>
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.