[gmx-users] How to connect different parts of a polymer?
mark.j.abraham at gmail.com
Fri May 22 13:22:46 CEST 2015
Given .rtp entries for the repeat units, pdb2gmx can use the specbond.dat
mechanism to generate cross-links, as it does e.g. for disulfide links in
proteins. See manual.
On Fri, May 22, 2015 at 12:12 PM faride badalkhani <
farideh.khamseh at gmail.com> wrote:
> Dear GMX users
> I am trying to parametrize GROMOS FF for PAMAM dendrimers. I have
> paramerized core of the dendrimer, its repeat units, and terminal groups
> separately. but I dont know how to connect them to build a complete
> dendrimer so that GROMACS can recognize dendrimer structure exactly.
> Could you help me, please?
> Truly yours,
> Gromacs Users mailing list
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
More information about the gromacs.org_gmx-users