[gmx-users] protein topology

Nikhil scinikhil at gmail.com
Wed Oct 28 08:03:57 CET 2015

thanks justin,
now i got the idea
but i have a basic question in case of protein-ligand simulation
i got the system after docking.
i made .gro files as per the tutorial (Protein-Ligand complex)
but it is not coming in the location that i got after docking ,so how 
should i proceed to get the ligand in the correct position to do MD

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