[gmx-users] Error installing during CXX Executable stage

[Mark Abraham]

Hi,

Looks like you've installed openblas or something and it doesn't correctly
arrange for its dependency gotoblas to be also installed. Get that, or
remove openblas and try again.

Mark

On Wed, 3 Aug 2016 02:14 Vito Spadavecchio <spadavecchio at gmail.com> wrote:

> Hello,
>
> On Ubuntu 16.04, I have tried cmake with the following command:
>
> *cmake .. -DGMX_BUILD_OWN_FFTW=ON
> -DCUDA_TOOLKIT_ROOT_DIR=/usr/local/cuda-8.0 -DGMX_GPU=ON -DGMX_MPI=ON *
>
> This process completes (with some warnings), and when you try to make, it
> gets to the following stage and fails:
>
> *...*
> *[ 98%] Linking CXX shared library ../../lib/libgromacs_mpi.so*
> *[ 98%] Built target libgromacs*
> *Scanning dependencies of target template*
> *[ 98%] Building CXX object
> share/template/CMakeFiles/template.dir/template.cpp.o*
> *[ 98%] Linking CXX executable ../../bin/template*
> */usr/lib/gcc/x86_64-linux-gnu/4.7/../../../../lib/libblas.so: undefined
> reference to `gotoblas'*
> *collect2: error: ld returned 1 exit status*
> *share/template/CMakeFiles/template.dir/build.make:113: recipe for target
> 'bin/template' failed*
> *make[2]: *** [bin/template] Error 1*
> *CMakeFiles/Makefile2:1889: recipe for target
> 'share/template/CMakeFiles/template.dir/all' failed*
> *make[1]: *** [share/template/CMakeFiles/template.dir/all] Error 2*
> *Makefile:160: recipe for target 'all' failed*
> *make: *** [all] Error *
>
>
>
> I have a nvidia card installed, using cuda-8.0 toolkit, and gcc-4.7 and
> g++-4.7, but also tried a gcc/g++ 4.9 combo, which also failed. Has anyone
> else seen this issue?
>
> Thanks!
> --
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