[gmx-users] make test gives errors in G2016

[Szilárd Páll]

That's strage, I've only seen such timeouts on very large thread-count
machines. What's your CPU? Could you try setting OMP_NUM_THREADS=1
(this will result in a few unit test failures, but has helped in some
cases).

Cheers,
--
Szilárd


On Sat, Aug 6, 2016 at 8:35 PM, Jacob Nowatzke <jn681 at humboldt.edu> wrote:
> Hello,
>
> I have not had this issue before with GROMACS 5.1.2. I installed 2016 last
> night and everything was going without a hitch until make test.
>
> I used:
> cmake.. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON -DGMX_GPU=on
> DGMX_USE_OPENCL=on
>
> I have Ubuntu 14.04 LTS, cmake 3.6.0, fftw 3.3.4, and am using a Radeon R9
> Nano for OpenCL (all packages are installed correctly to my knowledge-
> again, GROMACS 5.1.2 has installed well on same machine and with same cmake
> and fftw versions.
>
> Here is test fail output (at end of make test):
>
> 74% tests passed, 7 tests failed out of 27
>
> Label Time Summary:
> GTest                 = 10500.84 sec (18 tests)
> IntegrationTest       =  26.64 sec (2 tests)
> MpiIntegrationTest    =   3.24 sec (1 test)
> UnitTest              = 10500.84 sec (18 tests)
>
> Total Test time (real) = 10869.44 sec
>
> The following tests FAILED:
>       1 - TestUtilsUnitTests (Timeout)
>       7 - OnlineHelpUnitTests (Timeout)
>       8 - OptionsUnitTests (Timeout)
>       9 - RandomUnitTests (Timeout)
>      17 - AnalysisDataUnitTests (Timeout)
>      18 - SelectionUnitTests (Timeout)
>      19 - TrajectoryAnalysisUnitTests (Timeout)
> Errors while running CTest
> make[3]: *** [CMakeFiles/run-ctest] Error 8
> make[2]: *** [CMakeFiles/run-ctest.dir/all] Error 2
> make[1]: *** [CMakeFiles/check.dir/rule] Error 2
> make: *** [check] Error 2
>
> I could use some input from the GROMACS community in figuring out what went
> wrong with the installation. I hope I have provided enough info to help
> diagnose the issue. Also, glad to see gromacs.org is up and running once
> more!
>
> Best regards,
>
> JN
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