[gmx-users] unknown bond atom_type +

[Mark Abraham]

Hi,

The full version, I should say.

Mark

On Tue, 23 Aug 2016 23:54 Mark Abraham <mark.j.abraham at gmail.com> wrote:

> Hi,
>
> Does the future version of the error message suggest a line number for you
> to look at?
>
> Mark
>
> On Tue, 23 Aug 2016 23:11 SAKO MIRZAIE <sako.biochem at gmail.com> wrote:
>
>> Dear All,
>>
>> I am trying to do vacuum md on a huge polymer, f-127. I had to add sex
>> residues to rtp file, but with know atom types. now, when I run the
>> grompp, I got the following error:
>>
>> "unknown bond atom_type +"
>>
>> I checked my topology file and I have no any atom named "+". I don't
>> know what does it mean. any help is appreciated.
>>
>> best regards
>>
>> --
>> ***********************************************
>> Sako Mirzaie
>> PhD in biochemistry, Assistant Professor, science faculty,  Azad
>> university of
>> Sanandaj, Sanandaj, Iran
>> --
>> Gromacs Users mailing list
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>