[gmx-users] output file format under pbc

Chang Woon Jang changwoonjang at gmail.com
Sat Aug 27 03:37:15 CEST 2016


Dear Users,

   It works with the following command.

  > trjconv -f confout.gro -o output.gro -pbc whole

Thank you.

Best regards,
Changwoon Jang

On Fri, Aug 26, 2016 at 9:21 AM, Marlon Sidore <marlon.sidore at gmail.com>
wrote:

> Hello,
>
> If you want your molecule whole, the -pbc mol option of trjconv is probably
> what you're searching for.
>
> Marlon Sidore
>
>
> PhD Student
> Laboratoire d'Ingénierie des Systèmes Macromoléculaire (LISM)
> CNRS - UMR7255
> 31, Chemin Joseph Aiguier
> 13402 cedex 20 Marseille
> France
>
>
> 2016-08-26 15:05 GMT+02:00 Chang Woon Jang <changwoonjang at gmail.com>:
>
> > Dear Justin Lemkul,
> >
> >     Thank you. I am going to try it. I tried to understand trjconv via
> the
> > manual.
> >
> > Best regards,
> > Changwoon Jang
> > --
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