[gmx-users] Inconsistent shifts

[Mijiddorj Batsaikhan]

Dear Justin,

Thank you very much for reply.
My commands

gmx trjconv -s ../step7_1.tpr -f md.xtc -o md_nojump.xtc -pbc nojump
gmx trjconv -s ../step7_1.tpr -f md_nojump.xtc -pbc mol  -ur compact -n
../index.ndx -fit transxy -o md_noPBC.xtc

I got the inconsistent shifts error middle of the trajectory.

Best regards,

Mijiddorj


>
> ------------------------------
>
> Message: 5
> Date: Wed, 14 Dec 2016 07:54:53 -0500
> From: Justin Lemkul <jalemkul at vt.edu>
> To: gmx-users at gromacs.org
> Subject: Re: [gmx-users] Inconsistent shifts
> Message-ID: <c106ba53-7a82-6461-1414-171bfcec2c92 at vt.edu>
> Content-Type: text/plain; charset=windows-1252; format=flowed
>
>
>
> On 12/14/16 2:06 AM, Mijiddorj Batsaikhan wrote:
> > Dear gmx users,
> >
> > I simulated membrane and protein system. I would like to make analysis,
> and
> > during the removing periodicity, I got the inconsistent shifts fatal
> error.
> > How can fix this error? Can you help me?
> >
>
> Not without seeing your exact sequence of commands.
>
> -Justin
>
> --
> ==================================================
>
> Justin A. Lemkul, Ph.D.
> Ruth L. Kirschstein NRSA Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 629
> University of Maryland, Baltimore
> 20 Penn St.
> Baltimore, MD 21201
>
> jalemkul at outerbanks.umaryland.edu | (410) 706-7441
> http://mackerell.umaryland.edu/~jalemkul
>
> ==================================================
>