[gmx-users] trajectory analysis

[maria khan]

Dear gromacs users..
I have the following questions.
1) ::how i analyse trajectory using VMD?

2)::Trajectory analysis for overall protein structure stability??

3)::protein - ligand interaction i-e H-bonds and anyother interactions.??

4)::trajectory analysis for free energy binding of protein and ligand??

Maria khan
M.phil scholar
Institute of chemical sciences,,university of peshawar.
pakistan