[gmx-users] what means of contact in mindist?

[masoud keramati]

Hi

i mean interactions between hydrophobic residues in a protein-ligand
complex.

On Mon, Feb 1, 2016 at 5:06 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> First, what do you mean by a "hydrophobic interaction?"
>
> Mark
>
> On Mon, Feb 1, 2016 at 2:25 PM masoud keramati <keramati.ma3oud at gmail.com>
> wrote:
>
> > tnx dear tsjerk
> >
> > can i use this option for analysis of  hydrophobic interaction?
> > is distance 0.6 nm good choice for this purpose?
> >
> > On Mon, Feb 1, 2016 at 4:14 PM, Tsjerk Wassenaar <tsjerkw at gmail.com>
> > wrote:
> >
> > > Hey :)
> > >
> > > It tells how many pairs of atoms lie within a distance r (typically 0.6
> > > nm).
> > >
> > > Cheers,
> > >
> > > Tsjerk
> > >
> > > On Mon, Feb 1, 2016 at 1:08 PM, masoud keramati <
> > keramati.ma3oud at gmail.com
> > > >
> > > wrote:
> > >
> > > > Hi all
> > > >
> > > > what means of "number of contact" in  gmx mindist command?
> > > >
> > > > what we can understand from it's result?
> > > >
> > > >
> > > >
> > > > Best
> > > > --
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> > >
> > > --
> > > Tsjerk A. Wassenaar, Ph.D.
> > > --
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