February 2016 Archives by author

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Starting: Mon Feb 1 05:00:02 CET 2016
Ending: Mon Feb 29 22:53:20 CET 2016
Messages: 717

[gmx-users] Beginner's problem: g_rdf functions and -com Henry -
[gmx-users] Beginner's problem: g_rdf functions and -com. Second attempt. Henry -
[gmx-users] F4-Order-parameter sujithkakkat .
[gmx-users] Order parameter sujithkakkat .
[gmx-users] g_count Mark Abraham
[gmx-users] gmx bundle Mark Abraham
[gmx-users] what means of contact in mindist? Mark Abraham
[gmx-users] Nstlist and constrain simulations Mark Abraham
[gmx-users] AMBER nonbond params in GROMACS Mark Abraham
[gmx-users] g_count Mark Abraham
[gmx-users] Low GPU utilization Mark Abraham
[gmx-users] Verlet scheme and relative free binding energy Mark Abraham
[gmx-users] Verlet scheme and relative free binding energy Mark Abraham
[gmx-users] Molecular dynamics with methyl groups instead of peptide bonds. Mark Abraham
[gmx-users] Molecular dynamics with methyl groups instead of peptide bonds. Mark Abraham
[gmx-users] Nstlist and constrain simulations Mark Abraham
[gmx-users] How the topology file is created based on *.gro file? Mark Abraham
[gmx-users] How the topology file is created based on *.gro file? Mark Abraham
[gmx-users] How the topology file is created based on *.gro file? Mark Abraham
[gmx-users] Laptop features for MD simulations - recommendations Mark Abraham
[gmx-users] GROMACS 5.1.2 official release Mark Abraham
[gmx-users] CNT using g_x2top Mark Abraham
[gmx-users] Nstlist and constrain simulations Mark Abraham
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames Mark Abraham
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 24 Mark Abraham
[gmx-users] strange behaviout in 5.1.2 Mark Abraham
[gmx-users] strange behaviout in 5.1.2 Mark Abraham
[gmx-users] strange behaviout in 5.1.2 Mark Abraham
[gmx-users] strange behaviout in 5.1.2 Mark Abraham
[gmx-users] Sampling snapshots in arbitrary intervals of time Mark Abraham
[gmx-users] Sampling snapshots in arbitrary intervals of time Mark Abraham
[gmx-users] unusual bonds Mark Abraham
[gmx-users] Unknown left-hand 'pull-geometry' in parameter file Mark Abraham
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 Mark Abraham
[gmx-users] creating representative structures Mark Abraham
[gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x Mark Abraham
[gmx-users] Fwd: FW: PME settings in free energy calculations Mark Abraham
[gmx-users] Fwd: FW: PME settings in free energy calculations Mark Abraham
[gmx-users] Fwd: FW: PME settings in free energy calculations Mark Abraham
[gmx-users] Gromacs installation FTP issue Mark Abraham
[gmx-users] improper dihedral convention Mark Abraham
[gmx-users] improper dihedral convention Mark Abraham
[gmx-users] difference in rvdw , rlist parameters in em and nvt steps Mark Abraham
[gmx-users] difference in rvdw , rlist parameters in em and nvt steps Mark Abraham
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Mark Abraham
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Mark Abraham
[gmx-users] ADD_LIBRARY cmake error on Bluegene/Q Mark Abraham
[gmx-users] ADD_LIBRARY cmake error on Bluegene/Q Mark Abraham
[gmx-users] correct rlist and Verlet scheme Mark Abraham
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Mark Abraham
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Mark Abraham
[gmx-users] Installation problem Mark Abraham
[gmx-users] Simulation Terminated on Clusters Due to "cannot rename checkpoint file" Mark Abraham
[gmx-users] Installation problem Mark Abraham
[gmx-users] Porting to Gromacs of Parmbsc1 Mark Abraham
[gmx-users] Simulation Terminated on Clusters Due to "cannot rename checkpoint file" Mark Abraham
[gmx-users] which source file is handling for writing distance restraint potential energy to edr file? Mark Abraham
[gmx-users] correct rlist and Verlet scheme Mark Abraham
[gmx-users] correct rlist and Verlet scheme Mark Abraham
[gmx-users] PM3-AD ERROR GROMACS 5.1.1 Mark Abraham
[gmx-users] Porting to Gromacs of Parmbsc1 Mark Abraham
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Mark Abraham
[gmx-users] NVT-Eq ---> NVT-MD Mark Abraham
[gmx-users] calculate *all* carbon atom distances over time? Mark Abraham
[gmx-users] How to generate intermediates for alchemy mutation Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 76 Mark Abraham
[gmx-users] Question about GROMACS Mark Abraham
[gmx-users] Problem with running Gromacs v. 5 Mark Abraham
[gmx-users] Roadmap for new features Mark Abraham
[gmx-users] crosslinking polypeptide chains Mark Abraham
[gmx-users] crosslinking polypeptide chains Mark Abraham
[gmx-users] NPT equilibration with small cell Mark Abraham
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Mark Abraham
[gmx-users] correct rlist and Verlet scheme Mark Abraham
[gmx-users] Unknown bond_atomtype Mark Abraham
[gmx-users] Unknown bond_atomtype Mark Abraham
[gmx-users] Potential energy of protein after energy minimization Mark Abraham
[gmx-users] Segmentation fault while using external water model Mark Abraham
[gmx-users] Segmentation fault while using external water model Mark Abraham
[gmx-users] auto-neutralize system Mark Abraham
[gmx-users] Extend the simulation Mark Abraham
[gmx-users] Extend the simulation Mark Abraham
[gmx-users] fix COM Mark Abraham
[gmx-users] Did not find any molecules of type ... Mark Abraham
[gmx-users] fix COM Mark Abraham
[gmx-users] fix COM Mark Abraham
[gmx-users] OpenCL compile error Mark Abraham
[gmx-users] OpenCL compile error Mark Abraham
[gmx-users] Regarding installation problem Mark Abraham
[gmx-users] Regarding installation problem Mark Abraham
[gmx-users] Mdrun with rdd option Mark Abraham
[gmx-users] Huge conformational change of ATP molecules Mark Abraham
[gmx-users] Effect of compilers loaded at runtime Mark Abraham
[gmx-users] Effect of compilers loaded at runtime Mark Abraham
[gmx-users] Regarding installation problem Mark Abraham
[gmx-users] Regarding installation problem Mark Abraham
[gmx-users] Regarding installation problem Mark Abraham
[gmx-users] Regarding installation problem Mark Abraham
[gmx-users] Regarding installation problem Mark Abraham
[gmx-users] Huge conformational change of ATP molecules Mark Abraham
[gmx-users] Segmentation fault during equilibration Mark Abraham
[gmx-users] protein atoms with alternate conformations Mark Abraham
[gmx-users] generating an initial structure with a gromacs compatible tool Mark Abraham
[gmx-users] generating an initial structure with a gromacs compatible tool Mark Abraham
[gmx-users] generating an initial structure with a gromacs compatible tool Mark Abraham
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 Mark Abraham
[gmx-users] magnetic field Mark Abraham
[gmx-users] Sulfate ion parameters Mark Abraham
[gmx-users] Minimising forces for vibrational normal mode analysis Mark Abraham
[gmx-users] nrexcl Mark Abraham
[gmx-users] Protein-Ligand complex MD Adamu, Aliyu
[gmx-users] Protein-Ligand complex MD Adamu, Aliyu
[gmx-users] Getting and keeping ACPYPE updated Alan
[gmx-users] C_v and Temperature Alexander Alexander
[gmx-users] C_v and Temperature Alexander Alexander
[gmx-users] Fwd: C_v and Temperature Alexander Alexander
[gmx-users] Fattal error in npt_umbrella : Umbrella Sampling Simulations tutorial Alexander Alexander
[gmx-users] Fattal error in npt_umbrella : Umbrella Sampling Simulations tutorial Alexander Alexander
[gmx-users] Unknown left-hand 'pull-geometry' in parameter file Alexander Alexander
[gmx-users] PMF of a single water molecule respect to a surface Alexander Alexander
[gmx-users] energygrps Alexander Alexander
[gmx-users] NVT-Eq ---> NVT-MD Alexander Alexander
[gmx-users] NVT-Eq ---> NVT-MD Alexander Alexander
[gmx-users] NVT-Eq ---> NVT-MD Alexander Alexander
[gmx-users] NVT-Eq ---> NVT-MD Alexander Alexander
[gmx-users] Problem with running Gromacs v. 5 Alexander Alexander
[gmx-users] MPI and OpenMP threads Alexander Alexander
[gmx-users] MPI and OpenMP threads Alexander Alexander
[gmx-users] cutoff-scheme=Verlet Alexander Alexander
[gmx-users] Segmentation fault during equilibration Yasser Almeida
[gmx-users] vacuum/gas md Rasha Alqus
[gmx-users] Sampling snapshots in arbitrary intervals of time Irem Altan
[gmx-users] μVT simulations and genbox Irem Altan
[gmx-users] tip4p2005 with gromacs 4.6.5 Irem Altan
[gmx-users] tip4p2005 with gromacs 4.6.5 Irem Altan
[gmx-users] tip4p2005 with gromacs 4.6.5 Irem Altan
[gmx-users] Segmentation fault while using external water model Irem Altan
[gmx-users] Segmentation fault while using external water model Irem Altan
[gmx-users] position restraints for different protein atoms Irem Altan
[gmx-users] protein atoms with alternate conformations Irem Altan
[gmx-users] protein atoms with alternate conformations Irem Altan
[gmx-users] xpm matrix value Lábas Anikó
[gmx-users] xpm matrix value Lábas Anikó
[gmx-users] Nstlist and constrain simulations Michail Palaiokostas Avramidis
[gmx-users] Nstlist and constrain simulations Michail Palaiokostas Avramidis
[gmx-users] Nstlist and constrain simulations Michail Palaiokostas Avramidis
[gmx-users] Nstlist and constrain simulations Michail Palaiokostas Avramidis
[gmx-users] Separate permeating water molecule from solvent water Michail Palaiokostas Avramidis
[gmx-users] convert a trajectory file to a dat file Omme.Salameh Azin
[gmx-users] topology and coordinate file not matching after grompp SAPNA BORAH
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 SAPNA BORAH
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 SAPNA BORAH
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 SAPNA BORAH
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 SAPNA BORAH
[gmx-users] How can I calculate mutational free energy difference of wt and mutant protein? Mijiddorj Batsaikhan
[gmx-users] folding free energy difference of wt and mutant protein? Mijiddorj Batsaikhan
[gmx-users] Question about WHAM Supriyo Bhattacharya
[gmx-users] NPT equilibration with small cell VITALY V. CHABAN
[gmx-users] How to visualizing gro file in pymol Francesco Carbone
[gmx-users] gmx chi output clarification Francesco Carbone
[gmx-users] gmx chi output clarification Francesco Carbone
[gmx-users] gmx chi output clarification Francesco Carbone
[gmx-users] gmx chi output clarification Francesco Carbone
[gmx-users] gmx chi output clarification Francesco Carbone
[gmx-users] NPT equilibration with small cell Miguel Caro
[gmx-users] NPT equilibration with small cell Miguel Caro
[gmx-users] Porting to Gromacs of Parmbsc1 Sarath Chandra
[gmx-users] Porting to Gromacs of Parmbsc1 Sarath Chandra
[gmx-users] umbrella simulation PMF curve Sarath Chandra
[gmx-users] Equilibration error Abid Channa
[gmx-users] Equilibration error Abid Channa
[gmx-users] How I merge all .tpr files Abid Channa
[gmx-users] Acpype topolgy error Abid Channa
[gmx-users] difference between gmx energy and gmx traj Ray Chao
[gmx-users] Simulation Terminated on Clusters Due to "unable to write checkpoint file" Ray Chao
[gmx-users] Simulation Terminated on Clusters Due to "cannot rename checkpoint file" Ray Chao
[gmx-users] Simulation Terminated on Clusters Due to "cannot rename checkpoint file" Ray Chao
[gmx-users] Temperature Calculation in MD Ray Chao
[gmx-users] Temperature Calculation in MD Ray Chao
[gmx-users] pdb2gmx generate .itp file for each molecule Ray Chao
[gmx-users] AMBER nonbond params in GROMACS Patrick Charchar
[gmx-users] AMBER nonbond params in GROMACS Patrick Charchar
[gmx-users] Roadmap for new features Nicolas Cheron
[gmx-users] Acpype topolgy error Mutemi Chief
[gmx-users] Nitrate parameters CHARMM Tyler Cropley
[gmx-users] Laptop features for MD simulations - recommendations Davide Cruz
[gmx-users] protein transport in nanotube ANAND AMITKUMAR DHARIA
[gmx-users] REGRESSIONTESTS-5.1.tar.gz João M. Damas
[gmx-users] unusual bonds Sudip Das
[gmx-users] unusual bonds Sudip Das
[gmx-users] Simulation of chromatographic column Sivamoke Dissook
[gmx-users] Sulfate ion parameters Christian Bope Domilongo
[gmx-users] Screenshot from 2016-02-21 18:45:00.png Nikhil M (via Google Drive)
[gmx-users] Installation problem Prof. Eddie
[gmx-users] Installation problem Prof. Eddie
[gmx-users] Installation problem Prof. Eddie
[gmx-users] Installation problem Prof. Eddie
[gmx-users] Installation problem Prof. Eddie
[gmx-users] Protein-ligand system simulations with GROMACS Guillem Prats Ejarque
[gmx-users] Protein-ligand system simulations with GROMACS Guillem Prats Ejarque
[gmx-users] Extend the simulation Elsaid
[gmx-users] Shrink simulation box while maintaining ensemble Matthias Ernst
[gmx-users] protein-DNA complex Mahboobeh Eslami
[gmx-users] Fw: protein-DNA complex Mahboobeh Eslami
[gmx-users] Relative binding free energy Stefania Evoli
[gmx-users] Errata corrige: relative binding free energy calculation Stefania Evoli
[gmx-users] Choosing Parameter values of PTMs Laercio Pol Fachin
[gmx-users] auto-neutralize system Samuel Flores
[gmx-users] auto-neutralize system Samuel Flores
[gmx-users] Sulfate ion parameters #SUKRITI GUPTA#
[gmx-users] Sulfate ion parameters #SUKRITI GUPTA#
[gmx-users] gmx sasa versus g_sas Sara Del Galdo
[gmx-users] Optimum slice size (-sl) Warren Gallin
[gmx-users] RMSD reproducibility Biplab Ghosh
[gmx-users] Fragmented backbone Biplab Ghosh
[gmx-users] [CfP] 5th IEEE Track on Collaborative Modeling and Simulation (Comets 2016) **** Submission Deadline Extended **** Daniele Gianni
[gmx-users] Using make_ndx to combine many residues into 1 group Agnivo Gosai
[gmx-users] Using longer cut-off for AMBER99SB Agnivo Gosai
[gmx-users] Low GPU utilization Hovakim Grabski
[gmx-users] Fw: question:Justin toturial (Mass) Groenhof, Gerrit
[gmx-users] ADD_LIBRARY cmake error on Bluegene/Q Hardy, Adam
[gmx-users] ADD_LIBRARY cmake error on Bluegene/Q Hardy, Adam
[gmx-users] correct rlist and Verlet scheme Hardy, Adam
[gmx-users] ADD_LIBRARY cmake error on Bluegene/Q Hardy, Adam
[gmx-users] ADD_LIBRARY cmake error on Bluegene/Q Hardy, Adam
[gmx-users] add parameter Malihe Hasanzadeh
[gmx-users] add parameter Malihe Hasanzadeh
[gmx-users] pulling simulation Mehrnoosh Hazrati
[gmx-users] pulling simulation Mehrnoosh Hazrati
[gmx-users] Problem with running Gromacs v. 5 Mehrnoosh Hazrati
[gmx-users] Problem with running Gromacs v. 5 Mehrnoosh Hazrati
[gmx-users] Laptop features for MD simulations - recommendations João Henriques
[gmx-users] Laptop features for MD simulations - recommendations João Henriques
[gmx-users] auto-neutralize system João Henriques
[gmx-users] auto-neutralize system João Henriques
[gmx-users] Laptop features for MD simulations - recommendations Yasser Almeida Hernández
[gmx-users] Laptop features for MD simulations - recommendations Yasser Almeida Hernández
[gmx-users] Laptop features for MD simulations - recommendations Yasser Almeida Hernández
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames (sun) Sun Iba
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 1 Mehreen Jan
[gmx-users] gromacs error Mehreen Jan
[gmx-users] gromos43a1p-4.5.1.tgz can alos used for TPO and SEP Mehreen Jan
[gmx-users] sep and tpo Mehreen Jan
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 42 Mehreen Jan
[gmx-users] Fw: wrong number of control atomes in hdb Mehreen Jan
[gmx-users] wrong number of control atoms (2 iso 3) on line: 2 3 N -C -CA Mehreen Jan
[gmx-users] what is control atoms??? Mehreen Jan
[gmx-users] genebox and solvate command Mehreen Jan
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 78 Mehreen Jan
[gmx-users] GMX_USE_RTD SCP=OFF CMAKE option Mehreen Jan
[gmx-users] how to correct/remove error installation issue Mehreen Jan
[gmx-users] recompile gromacs 5.0.7 Mehreen Jan
[gmx-users] atom name 1 in topol.top and conf.gro does not match Chang Woon Jang
[gmx-users] (no subject) Kowsar Khajeh
[gmx-users] Atom X in residue YYY was not found in rtp fil Kowsar Khajeh
[gmx-users] magnetic field Kowsar Khajeh
[gmx-users] magnetic field Kowsar Khajeh
[gmx-users] fixing PBC view Netaly Khazanov
[gmx-users] fixing PBC view Netaly Khazanov
[gmx-users] Triglycerides: Berger Lipids and Kukol Lipids Kindlein, Moritz
[gmx-users] OpenCL compile error Geert Konijnendijk
[gmx-users] OpenCL compile error Geert Konijnendijk
[gmx-users] strange behaviout in 5.1.2 Kortzak, Daniel
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] ADD_LIBRARY cmake error on Bluegene/Q Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Irina Kosheleva
[gmx-users] Choosing Parameter values of PTMs Krzysztof Kuczera
[gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x Kutzner, Carsten
[gmx-users] which source file is handling for writing distance restraint potential energy to edr file? Yuno Lee
[gmx-users] which source file is handling for writing distance restraint potential energy to edr file? Yuno Lee
[gmx-users] gromacs error Justin Lemkul
[gmx-users] US perl scripts gives empty Justin Lemkul
[gmx-users] gromos43a1p-4.5.1.tgz can alos used for TPO and SEP Justin Lemkul
[gmx-users] Modified peptides Justin Lemkul
[gmx-users] dna topology in OPLS force field Justin Lemkul
[gmx-users] trjconv options? Justin Lemkul
[gmx-users] trjconv options? Justin Lemkul
[gmx-users] $GMXLIB or the working directory Justin Lemkul
[gmx-users] sep and tpo Justin Lemkul
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames Justin Lemkul
[gmx-users] strange behaviout in 5.1.2 Justin Lemkul
[gmx-users] <tutorial> lipid pressure flucuations Justin Lemkul
[gmx-users] strange behaviout in 5.1.2 Justin Lemkul
[gmx-users] Segmentation fault (core dumped) after grompp minimization Justin Lemkul
[gmx-users] Fattal error in npt_umbrella : Umbrella Sampling Simulations tutorial Justin Lemkul
[gmx-users] Can we expect Gromacs- non bonded energy calculation in GPU in near future? Justin Lemkul
[gmx-users] Fattal error in npt_umbrella : Umbrella Sampling Simulations tutorial Justin Lemkul
[gmx-users] fixing PBC view Justin Lemkul
[gmx-users] Equilibration error Justin Lemkul
[gmx-users] fatal error.Atomtype LC3 not found. Justin Lemkul
[gmx-users] wrong number of control atoms (2 iso 3) on line: 2 3 N -C -CA Justin Lemkul
[gmx-users] complex topology file Justin Lemkul
[gmx-users] difference between gmx energy and gmx traj Justin Lemkul
[gmx-users] add parameter Justin Lemkul
[gmx-users] complex topology file Justin Lemkul
[gmx-users] difference in rvdw , rlist parameters in em and nvt steps Justin Lemkul
[gmx-users] complex topology file Justin Lemkul
[gmx-users] View Trajectory - Water Expansion Justin Lemkul
[gmx-users] add parameter Justin Lemkul
[gmx-users] add parameter Justin Lemkul
[gmx-users] PMF of a single water molecule respect to a surface Justin Lemkul
[gmx-users] DSSP secondary structure Justin Lemkul
[gmx-users] pulling simulation Justin Lemkul
[gmx-users] energygrps Justin Lemkul
[gmx-users] DSSP secondary structure Justin Lemkul
[gmx-users] fatal error trying to simulate glycosylated proteins Justin Lemkul
[gmx-users] genebox and solvate command Justin Lemkul
[gmx-users] How I merge all .tpr files Justin Lemkul
[gmx-users] DSSP secondary structure Justin Lemkul
[gmx-users] NVT-Eq ---> NVT-MD Justin Lemkul
[gmx-users] calculate *all* carbon atom distances over time? Justin Lemkul
[gmx-users] Shrink simulation box while maintaining ensemble Justin Lemkul
[gmx-users] RMSD reproducibility Justin Lemkul
[gmx-users] NVT-Eq ---> NVT-MD Justin Lemkul
[gmx-users] NVT-Eq ---> NVT-MD Justin Lemkul
[gmx-users] calculate *all* carbon atom distances over time? Justin Lemkul
[gmx-users] calculate *all* carbon atom distances over time? Justin Lemkul
[gmx-users] DSSP secondary structure Justin Lemkul
[gmx-users] calculate *all* carbon atom distances over time? Justin Lemkul
[gmx-users] crosslinking polypeptide chains Justin Lemkul
[gmx-users] gmx chi output clarification Justin Lemkul
[gmx-users] error running grompp for ions.mdp input Justin Lemkul
[gmx-users] crosslinking polypeptide chains Justin Lemkul
[gmx-users] Density as a function of time Justin Lemkul
[gmx-users] gmx chi output clarification Justin Lemkul
[gmx-users] gmx chi output clarification Justin Lemkul
[gmx-users] Using make_ndx to combine many residues into 1 group Justin Lemkul
[gmx-users] NPT equilibration with small cell Justin Lemkul
[gmx-users] gmx chi output clarification Justin Lemkul
[gmx-users] Unknown bond_atomtype Justin Lemkul
[gmx-users] tip4p2005 with gromacs 4.6.5 Justin Lemkul
[gmx-users] tip4p2005 with gromacs 4.6.5 Justin Lemkul
[gmx-users] Pro-lig under one molecule type Justin Lemkul
[gmx-users] Pro-lig under one molecule type Justin Lemkul
[gmx-users] auto-neutralize system Justin Lemkul
[gmx-users] pdb2gmx with GROMOS Justin Lemkul
[gmx-users] converted topology from amber to gromacs Justin Lemkul
[gmx-users] how to set Restraints Justin Lemkul
[gmx-users] pdb2gmx with GROMOS Justin Lemkul
[gmx-users] Temperature Calculation in MD Justin Lemkul
[gmx-users] Did not find any molecules of type ... Justin Lemkul
[gmx-users] Query regarding energy calculation Justin Lemkul
[gmx-users] A questin to Justin on methods in the PPARγ-RXRα-DNA complex paper Justin Lemkul
[gmx-users] Embedding Protein into lipid bilayer Justin Lemkul
[gmx-users] docking Justin Lemkul
[gmx-users] converted topology from amber to gromacs Justin Lemkul
[gmx-users] how to set Restraints Justin Lemkul
[gmx-users] vacuum/gas md Justin Lemkul
[gmx-users] Temperature Calculation in MD Justin Lemkul
[gmx-users] Extend the simulation Justin Lemkul
[gmx-users] Extend the simulation Justin Lemkul
[gmx-users] Extend the simulation Justin Lemkul
[gmx-users] Extend the simulation Justin Lemkul
[gmx-users] Extend the simulation Justin Lemkul
[gmx-users] Potential energy Justin Lemkul
[gmx-users] umbrella simulation -pulling in other directions Justin Lemkul
[gmx-users] Embedding Protein into lipid bilayer Justin Lemkul
[gmx-users] docking Justin Lemkul
[gmx-users] position restraints for different protein atoms Justin Lemkul
[gmx-users] fix COM Justin Lemkul
[gmx-users] Potential energy Justin Lemkul
[gmx-users] Embedding Protein into lipid bilayer Justin Lemkul
[gmx-users] fix COM Justin Lemkul
[gmx-users] confusion on energy for a system of protein sovated in water Justin Lemkul
[gmx-users] gmx sasa versus g_sas Justin Lemkul
[gmx-users] confusion on energy for a system of protein sovated in water Justin Lemkul
[gmx-users] pdb2gmx generate .itp file for each molecule Justin Lemkul
[gmx-users] State B IN Topology Justin Lemkul
[gmx-users] structure expanding beyond eq values Justin Lemkul
[gmx-users] Reproducing Charmm36 POPC electron density Justin Lemkul
[gmx-users] Reproducing Charmm36 POPC electron density Justin Lemkul
[gmx-users] Protein-Ligand complex MD Justin Lemkul
[gmx-users] convert a trajectory file to a dat file Justin Lemkul
[gmx-users] renumber ligand atom numbers Justin Lemkul
[gmx-users] protein-DNA complex Justin Lemkul
[gmx-users] Using longer cut-off for AMBER99SB Justin Lemkul
[gmx-users] renumber ligand atom numbers Justin Lemkul
[gmx-users] renumber ligand atom numbers Justin Lemkul
[gmx-users] Atom X in residue YYY was not found in rtp fil Justin Lemkul
[gmx-users] complex topology nr error Justin Lemkul
[gmx-users] Separate permeating water molecule from solvent water Justin Lemkul
[gmx-users] Minimising forces for vibrational normal mode analysis Justin Lemkul
[gmx-users] Acpype topolgy error Justin Lemkul
[gmx-users] protein-DNA complex Justin Lemkul
[gmx-users] [gmx-developers] how to deal with improper dihedral angles Justin Lemkul
[gmx-users] Acpype topolgy error Justin Lemkul
[gmx-users] trjconv - two chains are separated Yunlong Liu
[gmx-users] PM3-AD ERROR GROMACS 5.1.1 Tuanan Lourenço
[gmx-users] Mdrun with rdd option Raju Lunkad
[gmx-users] Regarding installation problem SOUVIK MONDAL
[gmx-users] Regarding installation problem SOUVIK MONDAL
[gmx-users] Regarding installation problem SOUVIK MONDAL
[gmx-users] Regarding installation problem SOUVIK MONDAL
[gmx-users] Regarding installation problem SOUVIK MONDAL
[gmx-users] strange behaviout in 5.1.2 Erik Marklund
[gmx-users] strange behaviout in 5.1.2 Erik Marklund
[gmx-users] Weird configuration when pulling rate is small Erik Marklund
[gmx-users] Weird configuration when pulling rate is small Erik Marklund
[gmx-users] GMX_USE_RTD SCP=OFF CMAKE option Erik Marklund
[gmx-users] how to correct/remove error installation issue Erik Marklund
[gmx-users] recompile gromacs Erik Marklund
[gmx-users] Calculate energy associated with hydrogen bond Erik Marklund
[gmx-users] US perl scripts gives empty Nikhil Maroli
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames Nikhil Maroli
[gmx-users] Can we expect Gromacs- non bonded energy calculation in GPU in near future? Nikhil Maroli
[gmx-users] Can we expect Gromacs- non bonded energy calculation in GPU in near future? Nikhil Maroli
[gmx-users] fatal error.Atomtype LC3 not found. Nikhil Maroli
[gmx-users] Installation problem Nikhil Maroli
[gmx-users] Installation problem Nikhil Maroli
[gmx-users] Pro-lig under one molecule type Nikhil Maroli
[gmx-users] Regarding Lipid bilayer genration Nikhil Maroli
[gmx-users] umbrella simulation -pulling in other directions Nikhil Maroli
[gmx-users] umbrella simulation PMF curve Nikhil Maroli
[gmx-users] Protein-Ligand complex MD Nikhil Maroli
[gmx-users] Fw: question Mass
[gmx-users] Fw: question:Justin toturial Mass
[gmx-users] Fw: question:Justin toturial Mass
[gmx-users] creating representative structures Shyno Mathew
[gmx-users] creating representative structures Shyno Mathew
[gmx-users] Averages are not printed in log files after changing the .mdp files during HREMD restart Shyno Mathew
[gmx-users] Box size for decoupled molecule in NpT ensemble Andreas Mecklenfeld
[gmx-users] calculate *all* carbon atom distances over time? Athina Meletiou
[gmx-users] calculate *all* carbon atom distances over time? Athina Meletiou
[gmx-users] calculate *all* carbon atom distances over time? Athina Meletiou
[gmx-users] calculate *all* carbon atom distances over time? Athina Meletiou
[gmx-users] calculate *all* carbon atom distances over time? Athina Meletiou
[gmx-users] calculate *all* carbon atom distances over time? Athina Meletiou
[gmx-users] improper dihedral convention Parvez Mh
[gmx-users] nrexcl Parvez Mh
[gmx-users] error running grompp for ions.mdp input Ghada Mhmd
[gmx-users] error running grompp for ions.mdp input Ghada Mhmd
[gmx-users] NPT equilibration with small cell Caro Miguel
[gmx-users] Fw: add parameter Mahnaz Mirsoltani
[gmx-users] add parameter Mahnaz Mirsoltani
[gmx-users] Query regarding energy calculation Tushar Ranjan Moharana
[gmx-users] Calculate energy associated with hydrogen bond Tushar Ranjan Moharana
[gmx-users] How to generate intermediates for alchemy mutation Jagannath Mondal
[gmx-users] generating martini-version of lipids Jagannath Mondal
[gmx-users] Coarse Grain using martinize.py Jagannath Mondal
[gmx-users] Table Potential for molecules with partial charge on atoms Alireza Moradzadeh
[gmx-users] Fw: question André Farias de Moura
[gmx-users] Fw: question:Justin toturial André Farias de Moura
[gmx-users] Optimum slice size (-sl) André Farias de Moura
[gmx-users] NPT equilibration with small cell André Farias de Moura
[gmx-users] Atom X in residue YYY was not found in rtp fil André Farias de Moura
[gmx-users] crosslinking polypeptide chains Nash, Anthony
[gmx-users] crosslinking polypeptide chains Nash, Anthony
[gmx-users] Unknown bond_atomtype Nash, Anthony
[gmx-users] Unknown bond_atomtype Nash, Anthony
[gmx-users] Unknown bond_atomtype Nash, Anthony
[gmx-users] Unknown bond_atomtype Nash, Anthony
[gmx-users] Unknown bond_atomtype Nash, Anthony
[gmx-users] Unknown bond_atomtype Nash, Anthony
[gmx-users] generating an initial structure with a gromacs compatible tool Nash, Anthony
[gmx-users] structure expanding beyond eq values Nash, Anthony
[gmx-users] generating an initial structure with a gromacs compatible tool Nash, Anthony
[gmx-users] generating an initial structure with a gromacs compatible tool Nash, Anthony
[gmx-users] generating an initial structure with a gromacs compatible tool Nash, Anthony
[gmx-users] Minimising forces for vibrational normal mode analysis Nash, Anthony
[gmx-users] Minimising forces for vibrational normal mode analysis Nash, Anthony
[gmx-users] Minimising forces for vibrational normal mode analysis Nash, Anthony
[gmx-users] Minimising forces for vibrational normal mode analysis Nash, Anthony
[gmx-users] Minimising forces for vibrational normal mode analysis Nash, Anthony
[gmx-users] Minimising forces for vibrational normal mode analysis Nash, Anthony
[gmx-users] Minimising forces for vibrational normal mode analysis Nash, Anthony
[gmx-users] Choosing Parameter values of PTMs David Newman
[gmx-users] fatal error trying to simulate glycosylated proteins David Newman
[gmx-users] converted topology from amber to gromacs Hai Nguyen
[gmx-users] Wall potential different results for 12-6 and table Sudharsan Pandiyan
[gmx-users] topology and coordinate file not matching after grompp Sotirios Dionysios I. Papadatos
[gmx-users] docking Negar Parvizi
[gmx-users] topology and coordinate file not matching after grompp Swagata Patra
[gmx-users] topology and coordinate file not matching after grompp Swagata Patra
[gmx-users] topology and coordinate file not matching after grompp Swagata Patra
[gmx-users] GROMOS Topology files for DSPC Thomas Piggot
[gmx-users] Nstlist and constrain simulations Szilárd Páll
[gmx-users] Laptop features for MD simulations - recommendations Szilárd Páll
[gmx-users] Laptop features for MD simulations - recommendations Szilárd Páll
[gmx-users] Laptop features for MD simulations - recommendations Szilárd Páll
[gmx-users] Nstlist and constrain simulations Szilárd Páll
[gmx-users] Nstlist and constrain simulations Szilárd Páll
[gmx-users] Can we expect Gromacs- non bonded energy calculation in GPU in near future? Szilárd Páll
[gmx-users] MPI and OpenMP threads Szilárd Páll
[gmx-users] MPI and OpenMP threads Szilárd Páll
[gmx-users] correct rlist and Verlet scheme Szilárd Páll
[gmx-users] correct rlist and Verlet scheme Szilárd Páll
[gmx-users] correct rlist and Verlet scheme Szilárd Páll
[gmx-users] OpenCL compile error Szilárd Páll
[gmx-users] OpenCL compile error Szilárd Páll
[gmx-users] OpenCL compile error Szilárd Páll
[gmx-users] Regarding installation problem Szilárd Páll
[gmx-users] Reproducing Charmm36 POPC electron density Gmx QA
[gmx-users] Reproducing Charmm36 POPC electron density Gmx QA
[gmx-users] sigma and epsilon values for C and H atoms in CNT Sanchaita Rajkhowa
[gmx-users] CTP .gro and .itp file Mohsen Ramezanpour
[gmx-users] Verlet scheme and relative free binding energy Dries Van Rompaey
[gmx-users] Laptop features for MD simulations - recommendations Dries Van Rompaey
[gmx-users] How to visualizing gro file in pymol Dries Van Rompaey
[gmx-users] Laptop features for MD simulations - recommendations Dries Van Rompaey
[gmx-users] Fwd: FW: PME settings in free energy calculations Dries Van Rompaey
[gmx-users] Fwd: FW: PME settings in free energy calculations Dries Van Rompaey
[gmx-users] Fwd: FW: PME settings in free energy calculations Dries Van Rompaey
[gmx-users] Fwd: FW: PME settings in free energy calculations Dries Van Rompaey
[gmx-users] Fwd: FW: PME settings in free energy calculations Dries Van Rompaey
[gmx-users] pdb2gmx with GROMOS Dries Van Rompaey
[gmx-users] correct rlist and Verlet scheme Dries Van Rompaey
[gmx-users] pdb2gmx with GROMOS Dries Van Rompaey
[gmx-users] pdb2gmx with GROMOS Dries Van Rompaey
[gmx-users] cutoff-scheme=Verlet Dries Van Rompaey
[gmx-users] Effect of compilers loaded at runtime Dries Van Rompaey
[gmx-users] Protein-ligand system simulations with GROMACS Dries Van Rompaey
[gmx-users] Protein-ligand system simulations with GROMACS Dries Van Rompaey
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 Dries Van Rompaey
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 Dries Van Rompaey
[gmx-users] Problem in Potential energy of protein after energy minimization Subhashree Rout
[gmx-users] Potential energy of protein after energy minimization Subhashree Rout
[gmx-users] Pro-lig under one molecule type Subhashree Rout
[gmx-users] Potential energy of protein after energy minimization Subhashree Rout
[gmx-users] Pro-lig under one molecule type Subhashree Rout
[gmx-users] Not sure how to include dihedral angle params of ATP into force field Zheng Ruan
[gmx-users] Huge conformational change of ATP molecules Zheng Ruan
[gmx-users] Huge conformational change of ATP molecules Zheng Ruan
[gmx-users] difference in rvdw , rlist parameters in em and nvt steps M S
[gmx-users] difference in rvdw , rlist parameters in em and nvt steps M S
[gmx-users] difference in rvdw , rlist parameters in em and nvt steps M S
[gmx-users] difference in rvdw , rlist parameters in em and nvt steps Mahboobe Sadr
[gmx-users] complex topology file Sana Saeed
[gmx-users] complex topology file Sana Saeed
[gmx-users] Pro-lig under one molecule type Sana Saeed
[gmx-users] how to set Restraints Sana Saeed
[gmx-users] State B IN Topology Sana Saeed
[gmx-users] renumber ligand atom numbers Sana Saeed
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 155 Sana Saeed
[gmx-users] complex topology nr error Sana Saeed
[gmx-users] Regarding Lipid bilayer genration Bikash Ranjan Sahoo
[gmx-users] Regarding Lipid bilayer genration Bikash Ranjan Sahoo
[gmx-users] Regarding Lipid bilayer genration Bikash Ranjan Sahoo
[gmx-users] trjconv - two chains are separated Catarina A. Carvalheda dos Santos
[gmx-users] How to visualizing gro file in pymol Catarina A. Carvalheda dos Santos
[gmx-users] Introduction of mutation into a PDB file, how? Catarina A. Carvalheda dos Santos
[gmx-users] Embedding Protein into lipid bilayer Catarina A. Carvalheda dos Santos
[gmx-users] Embedding Protein into lipid bilayer Catarina A. Carvalheda dos Santos
[gmx-users] Embedding Protein into lipid bilayer Catarina A. Carvalheda dos Santos
[gmx-users] Embedding Protein into lipid bilayer Catarina A. Carvalheda dos Santos
[gmx-users] Optimum slice size (-sl) Ashutosh Akshay Shah
[gmx-users] Optimum slice size (-sl) Ashutosh Akshay Shah
[gmx-users] Optimum slice size (-sl) Ashutosh Akshay Shah
[gmx-users] Density as a function of time Ashutosh Akshay Shah
[gmx-users] Density as a function of time Ashutosh Akshay Shah
[gmx-users] Reading multiple trajectories for Gromacs analysis Ganesh Shahane
[gmx-users] Fwd: FW: PME settings in free energy calculations Michael Shirts
[gmx-users] Fwd: FW: PME settings in free energy calculations Michael Shirts
[gmx-users] Fwd: FW: PME settings in free energy calculations Michael Shirts
[gmx-users] μVT simulations and genbox Michael Shirts
[gmx-users] GROMOS Topology files for DSPC John Smith
[gmx-users] gromacs-5.1.1 installation error: libxml2 problem Smith, Micholas D.
[gmx-users] error running grompp for ions.mdp input Smith, Micholas D.
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames (sun) Björn Sommer
[gmx-users] Water removed from system and visualizing protein alone Björn Sommer
[gmx-users] Laptop features for MD simulations - recommendations Björn Sommer
[gmx-users] Regarding Lipid bilayer genration (Bikash Ranjan Sahoo) Björn Sommer
[gmx-users] Regarding Lipid bilayer genration (Bikash Ranjan Sahoo) Björn Sommer
[gmx-users] Post-doctoral position in Computational Physics Andrea Spitaleri
[gmx-users] C_v and Temperature David van der Spoel
[gmx-users] DMF molecule David van der Spoel
[gmx-users] Prodrg disturbed hybridization state of doubly bonded nitrogen David van der Spoel
[gmx-users] g_hyrorder David van der Spoel
[gmx-users] folding free energy difference of wt and mutant protein? David van der Spoel
[gmx-users] View Trajectory - Water Expansion Natalie Stephenson
[gmx-users] trjconv - two chains are separated Peter Stern
[gmx-users] creating representative structures Téletchéa Stéphane
[gmx-users] Introduction of mutation into a PDB file, how? Seera Suryanarayana
[gmx-users] Not sure how to include dihedral angle params of ATP into force field Piggot T.
[gmx-users] auto-neutralize system Piggot T.
[gmx-users] auto-neutralize system Piggot T.
[gmx-users] auto-neutralize system Piggot T.
[gmx-users] Free energy calculations with tabulated potentials POTTER T.D.
[gmx-users] weird configuration when pulling rate is small Ming Tang
[gmx-users] weird configuration when pulling rate is small Ming Tang
[gmx-users] Weird configuration when pulling rate is small Ming Tang
[gmx-users] Weird configuration when pulling rate is small Ming Tang
[gmx-users] the helical axis of a triple helix Ming Tang
[gmx-users] fix COM Ming Tang
[gmx-users] fix COM Ming Tang
[gmx-users] fix COM Ming Tang
[gmx-users] fix COM Ming Tang
[gmx-users] confusion on energy for a system of protein sovated in water Ming Tang
[gmx-users] confusion on energy for a system of protein sovated in water Ming Tang
[gmx-users] pdb2gmx generate .itp file for each molecule Ming Tang
[gmx-users] trjconv - two chains are separated Trayder Thomas
[gmx-users] Rarefied trajectory Timofey Tyugashev
[gmx-users] trjconv options? Timofey Tyugashev
[gmx-users] trjconv options? Timofey Tyugashev
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 24 Timofey Tyugashev
[gmx-users] ff99SB-ILDN and .mdp parameters Timofey Tyugashev
[gmx-users] correct rlist and Verlet scheme Timofey Tyugashev
[gmx-users] correct rlist and Verlet scheme Timofey Tyugashev
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 76 Timofey Tyugashev
[gmx-users] correct rlist and Verlet scheme Timofey Tyugashev
[gmx-users] correct rlist and Verlet scheme Timofey Tyugashev
[gmx-users] correct rlist and Verlet scheme Timofey Tyugashev
[gmx-users] Strange behaviour of sorient. Timofey Tyugashev
[gmx-users] gromacs.org_gmx-users Digest, Vol 142, Issue 115 Timofey Tyugashev
[gmx-users] A questin to Justin on methods in the PPARγ-RXRα-DNA complex paper Timofey Tyugashev
[gmx-users] Nitrate parameters CHARMM Ullmann, Thomas
[gmx-users] How to visualizing gro file in pymol Diogo Vila Viçosa
[gmx-users] How the topology file is created based on *.gro file? Diogo Vila Viçosa
[gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x Johannes Wagner
[gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x Johannes Wagner
[gmx-users] pp/pme ratio differences between gromacs 5.0.x and 5.1.x Johannes Wagner
[gmx-users] weird configuration when pulling rate is small Tsjerk Wassenaar
[gmx-users] what means of contact in mindist? Tsjerk Wassenaar
[gmx-users] Rarefied trajectory Tsjerk Wassenaar
[gmx-users] topology and coordinate file not matching after grompp Tsjerk Wassenaar
[gmx-users] Different results for same protein's simulation in 4.6.5 and 5.0.4 Tsjerk Wassenaar
[gmx-users] Shrink simulation box while maintaining ensemble Tsjerk Wassenaar
[gmx-users] NPT equilibration with small cell Tsjerk Wassenaar
[gmx-users] Fragmented backbone Tsjerk Wassenaar
[gmx-users] Regarding Lipid bilayer genration Tsjerk Wassenaar
[gmx-users] Coarse Grain using martinize.py Tsjerk Wassenaar
[gmx-users] Minimising forces for vibrational normal mode analysis Tsjerk Wassenaar
[gmx-users] Minimising forces for vibrational normal mode analysis Tsjerk Wassenaar
[gmx-users] generating martini-version of lipids Tsjerk Wassenaar
[gmx-users] Coarse grain membrane simulation of DPPC Tsjerk Wassenaar
[gmx-users] gmx bundle Felix W.-H. Weng
[gmx-users] Removing relative motion of water Felix W.-H. Weng
[gmx-users] Did not find any molecules of type ... Marta Wisniewska
[gmx-users] Did not find any molecules of type ... Marta Wisniewska
[gmx-users] Gromacs installation FTP issue Ragothaman Yennamalli
[gmx-users] Gromacs installation FTP issue Ragothaman Yennamalli
[gmx-users] Extend the simulation Elsaid Younes
[gmx-users] Extend the simulation Elsaid Younes
[gmx-users] Extend the simulation Elsaid Younes
[gmx-users] Extend the simulation Elsaid Younes
[gmx-users] Extend the simulation Elsaid Younes
[gmx-users] Extend the simulation Elsaid Younes
[gmx-users] Extend the simulation Elsaid Younes
[gmx-users] Extend the simulation Elsaid Younes
[gmx-users] Segmentation fault (core dumped) after grompp minimization Poncho Arvayo Zatarain
[gmx-users] Polymer structure preparation Lei Zhao
[gmx-users] Prodrg disturbed hybridization state of doubly bonded nitrogen Saman Yousuf ali
[gmx-users] How to visualizing gro file in pymol anu chandra
[gmx-users] Reading multiple trajectories for Gromacs analysis anu chandra
[gmx-users] Adding chain ID with g_cluster outputs anu chandra
[gmx-users] Molecular dynamics with methyl groups instead of peptide bonds. Dawid das
[gmx-users] Molecular dynamics with methyl groups instead of peptide bonds. Dawid das
[gmx-users] How the topology file is created based on *.gro file? Dawid das
[gmx-users] How the topology file is created based on *.gro file? Dawid das
[gmx-users] How the topology file is created based on *.gro file? Dawid das
[gmx-users] Atom X in residue YYY was not found in rtp fil Dawid das
[gmx-users] Atom X in residue YYY was not found in rtp fil Dawid das
[gmx-users] No bonds in *.top file Dawid das
[gmx-users] Thermal energy gozde ergin
[gmx-users] dna topology in OPLS force field soumadwip ghosh
[gmx-users] CNT using g_x2top soumadwip ghosh
[gmx-users] sigma and epsilon values for C and H atoms in CNT soumadwip ghosh
[gmx-users] Introduction of mutation into a PDB file, how? nithyanny90 at gmail.com
[gmx-users] (no subject) yanbochen123 at gmail.com
[gmx-users] what means of contact in mindist? masoud keramati
[gmx-users] what means of contact in mindist? masoud keramati
[gmx-users] what means of contact in mindist? masoud keramati
[gmx-users] fatal error.Atomtype LC3 not found. Waqas khan
[gmx-users] gmx bundle m.monsefi93
[gmx-users] Question about GROMACS khourshaeishargh at mech.sharif.ir
[gmx-users] Gromacs issue khourshaeishargh at mech.sharif.ir
[gmx-users] Gromacs issue khourshaeishargh at mech.sharif.ir
[gmx-users] Embedding Protein into lipid bilayer khourshaeishargh at mech.sharif.ir
[gmx-users] (no subject) khourshaeishargh at mech.sharif.ir
[gmx-users] Embedding Protein into lipid bilayer khourshaeishargh at mech.sharif.ir
[gmx-users] Embedding Protein into lipid bilayer khourshaeishargh at mech.sharif.ir
[gmx-users] Embedding Protein into lipid bilayer khourshaeishargh at mech.sharif.ir
[gmx-users] A question to Justin about his helpful tutorial khourshaeishargh at mech.sharif.ir
[gmx-users] Embedding Protein into lipid bilayer khourshaeishargh at mech.sharif.ir
[gmx-users] Embedding Protein into lipid bilayer khourshaeishargh at mech.sharif.ir
[gmx-users] Coarse Grain using martinize.py khourshaeishargh at mech.sharif.ir
[gmx-users] Coarse grain membrane simulation of DPPC khourshaeishargh at mech.sharif.ir
[gmx-users] Coarse Grain using martinize.py jagannath mondal
[gmx-users] DMF molecule mohammad r
[gmx-users] DSSP secondary structure mohammad r
[gmx-users] DSSP secondary structure mohammad r
[gmx-users] DSSP secondary structure mohammad r
[gmx-users] DSSP secondary structure mohammad r
[gmx-users] converted topology from amber to gromacs mohammad r
[gmx-users] converted topology from amber to gromacs mohammad r
[gmx-users] converted topology from amber to gromacs mohammad r
[gmx-users] converted topology from amber to gromacs mohammad r
[gmx-users] Potential energy mohammad r
[gmx-users] Potential energy mohammad r
[gmx-users] modeling CNT, center of mass velocity, energy minimization mohammad r
[gmx-users] modeling CNT, center of mass velocity, energy minimization mohammad r
[gmx-users] REGRESSIONTESTS-5.1.tar.gz ikrormi rungsung
[gmx-users] TIP4P water model abdus sabuj
[gmx-users] Choosing Parameter values of PTMs bipin singh
[gmx-users] Modified peptides sun
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames sun
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames sun
[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames sun
[gmx-users] gmx cluster sun
[gmx-users] Note of geometric combination rules in LJ-PME badamkhatan togoldor
[gmx-users] Note of geometric combination rules in LJ-PME badamkhatan togoldor
[gmx-users] g_count vgsplayer1
[gmx-users] g_count vgsplayer1
[gmx-users] <tutorial> lipid pressure flucuations xy21hb
[gmx-users] <tutorial> lipid pressure flucuations xy21hb
[gmx-users] g_hyrorder xy21hb
[gmx-users] g_hyrorder xy21hb
[gmx-users] what means of contact in mindist? 范聪
[gmx-users] what means of contact in mindist? 范聪

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