[gmx-users] Water removed from system and visualizing protein alone in VMD. But problem in visualization of all frames
sun.iba2 at gmail.com
Sat Feb 6 08:56:56 CET 2016
If I change the representation then the problem occurs actually. Its fine with trajectory, for 10ns, 1001 frames are loaded in VMD. But when I play to visualize, the protein does not move at all. I mean, only one conformation remains in all frames which is not possible, I believe. This error never occured before. One more thing, i have saved cluster.pdb, it goes nice in pymol and all different structures can be viewed. What happens when i change representation?
Sent from my iPhone
> On 05-Feb-2016, at 3:20 pm, Mark Abraham <mark.j.abraham at gmail.com> wrote:
> That works, but only if your full trajectory is small enough to fit in
>> On Fri, 5 Feb 2016 09:05 Nikhil Maroli <scinikhil at gmail.com> wrote:
>> simple way is to load the full trajectory and gro file then change the
>> water draw style and protein draw style,so that you can have a nice look
>> on the structure,separately ..no need to remove anything from the .gro and
>> tpr or xtc
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