[gmx-users] Choosing Parameter values of PTMs

[Krzysztof Kuczera]

Take a look at the CHARMM-GUI input generator - that allows you to set 
up simulations for glycans and various glycosylated systems

Krzysztof Kuczera

On 2/11/16 6:59 AM, David Newman wrote:
> Hi all,
>
> I'm starting a MD project using gromacs and we're looking to expand on the previous work in the lab modelling our receptors of interest by looking at the effects of gylcosylation. Is there a current best standard for parameters for modelling glycans?
>
> Thanks,


-- 
Krzysztof Kuczera
Departments of Chemistry and Molecular Biosciences
The University of Kansas
1251 Wescoe Hall Drive, 5090 Malott Hall
Lawrence, KS 66045
Tel: 785-864-5060 Fax: 785-864-5396 email: kkuczera at ku.edu
http://oolung.chem.ku.edu/~kuczera/home.html