[gmx-users] Choosing Parameter values of PTMs

Laercio Pol Fachin laercio_pf at yahoo.com.br
Thu Feb 11 19:11:04 CET 2016

If you're planning to use GROMOS parameters set, please take a look at the following publications, about GROMOS 53A6glyc:
Best regards,Laercio Pol Fachin

    Em Quinta-feira, 11 de Fevereiro de 2016 13:17, "gromacs.org_gmx-users-request at maillist.sys.kth.se" <gromacs.org_gmx-users-request at maillist.sys.kth.se> escreveu:

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Today's Topics:

  1. View Trajectory - Water Expansion (Natalie Stephenson)
  2. Re: View Trajectory - Water Expansion (Justin Lemkul)
  3. Choosing Parameter values of PTMs (David Newman)
  4. Re: Choosing Parameter values of PTMs (bipin singh)
  5. Re: Choosing Parameter values of PTMs (Krzysztof Kuczera)


Message: 3
Date: Thu, 11 Feb 2016 12:59:41 +0000
From: David Newman <david.newman-4 at postgrad.manchester.ac.uk>
To: "gromacs.org_gmx-users at maillist.sys.kth.se"
    <gromacs.org_gmx-users at maillist.sys.kth.se>
Subject: [gmx-users] Choosing Parameter values of PTMs
    <DB3PR01MB3310F25393EAA2371795EB58BA80 at DB3PR01MB331.eurprd01.prod.exchangelabs.com>
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Hi all,

I'm starting a MD project using gromacs and we're looking to expand on the previous work in the lab modelling our receptors of interest by looking at the effects of gylcosylation. Is there a current best standard for parameters for modelling glycans?



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