[gmx-users] Choosing Parameter values of PTMs

[Laercio Pol Fachin]

Hi, 
If you're planning to use GROMOS parameters set, please take a look at the following publications, about GROMOS 53A6glyc:
http://pubs.acs.org/doi/pdf/10.1021/ct300479h
http://onlinelibrary.wiley.com/store/10.1002/jcc.23721/asset/jcc23721.pdf;jsessionid=10781A1F0B927C8F5B1C7DB43FB5C856.f04t03?v=1&t=ikikyyfp&s=abdd9c6763f6a62c815d1add4b4fce41504c92e2
Best regards,Laercio Pol Fachin

    Em Quinta-feira, 11 de Fevereiro de 2016 13:17, "gromacs.org_gmx-users-request at maillist.sys.kth.se" <gromacs.org_gmx-users-request at maillist.sys.kth.se> escreveu:
 

 Send gromacs.org_gmx-users mailing list submissions to
    gromacs.org_gmx-users at maillist.sys.kth.se

To subscribe or unsubscribe via the World Wide Web, visit
    https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users
or, via email, send a message with subject or body 'help' to
    gromacs.org_gmx-users-request at maillist.sys.kth.se

You can reach the person managing the list at
    gromacs.org_gmx-users-owner at maillist.sys.kth.se

When replying, please edit your Subject line so it is more specific
than "Re: Contents of gromacs.org_gmx-users digest..."


Today's Topics:

  1. View Trajectory - Water Expansion (Natalie Stephenson)
  2. Re: View Trajectory - Water Expansion (Justin Lemkul)
  3. Choosing Parameter values of PTMs (David Newman)
  4. Re: Choosing Parameter values of PTMs (bipin singh)
  5. Re: Choosing Parameter values of PTMs (Krzysztof Kuczera)


----------------------------------------------------------------------

Message: 3
Date: Thu, 11 Feb 2016 12:59:41 +0000
From: David Newman <david.newman-4 at postgrad.manchester.ac.uk>
To: "gromacs.org_gmx-users at maillist.sys.kth.se"
    <gromacs.org_gmx-users at maillist.sys.kth.se>
Subject: [gmx-users] Choosing Parameter values of PTMs
Message-ID:
    <DB3PR01MB3310F25393EAA2371795EB58BA80 at DB3PR01MB331.eurprd01.prod.exchangelabs.com>
    
Content-Type: text/plain; charset="iso-8859-1"

Hi all,

I'm starting a MD project using gromacs and we're looking to expand on the previous work in the lab modelling our receptors of interest by looking at the effects of gylcosylation. Is there a current best standard for parameters for modelling glycans?

Thanks,


------------------------------

-- 
Gromacs Users mailing list

* Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.

End of gromacs.org_gmx-users Digest, Vol 142, Issue 55
******************************************************