[gmx-users] Installation problem

Prof. Eddie eackad at siue.edu
Fri Feb 12 17:59:42 CET 2016


Hi All,
I'm trying to install GROMACS 5.1.2 on ubuntu 14.04 LTS. I used:
cmake .. -DGMX_GPU=on -DGMX_USE_OPENCL=on -DGMX_BUILD_OWN_FFTW=ON
-DREGRESSIONTEST_DOWNLOAD=ON

Everything went fine, but make ended with:

[100%] Building C object
src/gromacs/CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o
[100%] Building C object
src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o
Linking CXX shared library ../../lib/libgromacs.so
[100%] Built target libgromacs
Scanning dependencies of target template
[100%] Building CXX object
share/template/CMakeFiles/template.dir/template.cpp.o
Linking CXX executable ../../bin/template
../../lib/libgromacs.so.1.2.0: undefined reference to
`clEnqueueBarrierWithWaitList'
../../lib/libgromacs.so.1.2.0: undefined reference to
`clEnqueueMarkerWithWaitList'
collect2: error: ld returned 1 exit status
make[2]: *** [bin/template] Error 1
make[1]: *** [share/template/CMakeFiles/template.dir/all] Error 2
make: *** [all] Error 2
eddie at heartofgold:~/bin/gromacs-5.1.2/build$ ^C
eddie at heartofgold:~/bin/gromacs-5.1.2/build$ make
[  0%] Built target fftwBuild
[100%] Built target libgromacs
Linking CXX executable ../../bin/template
../../lib/libgromacs.so.1.2.0: undefined reference to
`clEnqueueBarrierWithWaitList'
../../lib/libgromacs.so.1.2.0: undefined reference to
`clEnqueueMarkerWithWaitList'
collect2: error: ld returned 1 exit status
make[2]: *** [bin/template] Error 1
make[1]: *** [share/template/CMakeFiles/template.dir/all] Error 2
make: *** [all] Error 2

Any help would be very welcome! Thanks,
Eddie
-- 
_________________________________________________________
Edward Ackad, Ph.D <http://www.siue.edu/%7Eeackad>
Assistant Professor of Physics
Computational Nanophotonics/Biophysics
Southern Illinois University Edwardsville
(618) 650-2390


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