[gmx-users] Simulation Terminated on Clusters Due to "unable to write checkpoint file"
xiaoainisa at gmail.com
Sun Feb 14 01:05:02 CET 2016
ear gmx users,
I am running my cases on the cluster. The simulation was always terminated
after running for a while. The error was always "Unable to write checkpoint
file: maybe you are out of disk space". However, I have 1TB of disk
allocation, which is enough, and the disk is in good condition. Besides, I
created the .top .gro .mdp files on my own workstation and also changed the
permission from "read-only" to "read and write". The gromacs version is
5.0.2 or 5.1.2 on the clusters.
Is there any specific requirement about running gromacs on clusters? Your
response is very much appreciated.
You all have a good Valentine's day.
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