[gmx-users] genebox and solvate command

[Mehreen Jan]

 when I have run the genbox command, it has shown that "This tool has been removed from Gromacs
5.0. Please see
http://www.gromacs.org/Documentation/How-tos/Tool_Changes_for_5.0
for ideas how to perform the same tasks with the new tools."


In gromacs site, it is written that
genbox

This tool has been split to gmx solvate and gmx insert-molecules.
gmx

for solvate command:
solvate -cp *.pdb -cs spc216.gro -p topol.top -o *.pdb

 error:
undefined solute box
create one with gmx editconf or give expicit -box command line option??


what about gene box???


with "gmx help solvate"  and "gmx help
insert-molecules it is not clear what should i do???
what command are used???

thank you