[gmx-users] Regarding Lipid bilayer genration

[Tsjerk Wassenaar]

Hi Bikash,

You can use a Charmm membrane with an Amber topology. The AA atom orders
are the same, AFAIK. For what it's worth, you can generate membranes
quickly using the coarse-grain command-line tool insane and (after
equilibration) convert the result to AA with the backmapping tool backward.

Cheers,

Tsjerk
On Feb 20, 2016 08:35, "Bikash Ranjan Sahoo" <
bikash.bioinformatics at gmail.com> wrote:

> Thanks. Charmm_GUI can only generate membrane for Charmm ff. I need to work
> on Amber ff.
>
>
> Regards
> Bikash
>
> ----------------------------------------------------------
>
> *BIKASH RANJAN SAHOO (Ph.D. D3) Laboratory of Molecular
> Biophysics, Institute for Protein Research, *
> *Osaka University, Japan*
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> <bikash.bioinformatics at gmail.com>*
>
> On Fri, Feb 19, 2016 at 8:32 PM, Nikhil Maroli <scinikhil at gmail.com>
> wrote:
>
> > In general,i used charmmgui server and VMD for generating lipid bilyer!
> >
> >
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