[gmx-users] Potential energy
mohammad.r0325 at yahoo.com
Sun Feb 21 21:38:38 CET 2016
Thank you Justin,
do you know how I can find or modify the center of mass velocity of my system?
On Sunday, February 21, 2016 11:50 PM, Justin Lemkul <jalemkul at vt.edu> wrote:
On 2/21/16 3:15 PM, mohammad r wrote:
> Hi everybody,
> Is it correct to say the potential energy after energyminimization should be negative and in the order of 105-106 ?according to gromacs tutorial:
As a broad generalization, but strictly speaking, that's not always true. A
comparable protein in a similarly sized box will probably have something on that
order, but that is by no means an absolute rule.
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
Gromacs Users mailing list
* Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.
More information about the gromacs.org_gmx-users