[gmx-users] Atom X in residue YYY was not found in rtp fil

Kowsar Khajeh khajeh.k.2005 at gmail.com
Sat Feb 27 23:15:53 CET 2016


Hello.
I registered in gromacs.org, aask my question but any answer I have not
recieved.

Kosar Khajeh
=================================
PhD Candidate
Faculty of Mechanical Engineering
University of Tabriz, Tabriz, Iran


On Sun, Feb 28, 2016 at 1:18 AM, Dawid das <addiw7 at googlemail.com> wrote:

> 2016-02-27 22:42 GMT+01:00 Justin Lemkul <jalemkul at vt.edu>:
>
> > Content is read by position, which is precisely your problem.
> >
>
>
> Yes, I am aware of that. By I did not change anything in position of my
> *.pdb file.
> I know that in different years the format changes somehow. The *.pdb file I
> am using is from 1998.
> The one I used before was 2005 or something. So probably the position was
> moved by one.
>
> Thanks anyway by reminding me that.
>
> Best regards,
> Dawid Grabarek
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