[gmx-users] Constraints errors

Alireza Moradzadeh a.mrdzd at gmail.com
Thu Jan 21 05:16:50 CET 2016


Dear Users,
I want to simulate [BMIM][PF6] using following itp
[ moleculetype ]
PF6 2
[ atoms ]
; nr type resnr residue atom cgnr charge mass
1 P 1 PF6 P1 1 1.13 30.974
2 FP 1 PF6 F2 2 -0.33 18.998
3 FP 1 PF6 F3 3 -0.33 18.998
4 FP 1 PF6 F4 4 -0.33 18.998
5 FP 1 PF6 F5 5 -0.33 18.998
6 FP 1 PF6 F6 6 -0.33 18.998
7 FP 1 PF6 F7 7 -0.33 18.998
[ bonds ]
1 2 1
1 3 1
1 4 1
1 5 1
1 6 1
1 7 1
[ angles ]
2 1 3 1
2 1 4 1
2 1 6 1
2 1 7 1
3 1 4 1
3 1 5 1
3 1 7 1
4 1 5 1
4 1 6 1
5 1 6 1
5 1 7 1
6 1 7 1
2 1 5 1 180. 1165.
3 1 6 1 180. 1165.
4 1 7 1 180. 1165.

But I get following errors for both of my molecules.

Molecule type "PF" has 21 constraints.
For stability and efficiency reasons there should not be more constraints
more than internal degree of freedoms: 15
Is it right to use maxwarn in this case?!


Best Regards,
Alireza Moradzadeh


More information about the gromacs.org_gmx-users mailing list