[gmx-users] protein-protein interaction

[Mahboobeh Eslami]

 hi all I have used the HEX software for docking two protein.I want to do molecular dynamics simulations on the obtained complex from docking process. should  the simulation of  protein-protein complex be done like the protein-ligand complex or the protein in water simulation?  How is simulated protein-protein complex?
Thanks so much for your help.