[gmx-users] protein-protein interaction

[Smith, Micholas D.]

Run your pdb through pdb2gmx with the splitchains option. That should give you a good start.


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Micholas Dean Smith, PhD.
Post-doctoral Research Associate
University of Tennessee/Oak Ridge National Laboratory
Center for Molecular Biophysics

________________________________________
From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> on behalf of Mahboobeh Eslami <mahboobeh.eslami at yahoo.com>
Sent: Thursday, January 28, 2016 10:58 AM
To: Gmx-users
Subject: [gmx-users] protein-protein interaction

 hi all I have used the HEX software for docking two protein.I want to do molecular dynamics simulations on the obtained complex from docking process. should  the simulation of  protein-protein complex be done like the protein-ligand complex or the protein in water simulation?  How is simulated protein-protein complex?
Thanks so much for your help.
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