[gmx-users] Fw: The average number of H-bonds

[Mahboobeh Eslami]

     On Saturday, July 9, 2016 7:19 PM, Mahboobeh Eslami <mahboobeh.eslami at yahoo.com> wrote:
 

  Hi GMX usersI have performed MD simulation on Protein-DNA complex for 100 ns.I want to calculate the average number of H-bonds over time. I studied a paper that the average number of H-bonds over time had been calculated for protein and DNA separately but I don't know that how this parameter has been calculated. How is this parameter  calculated?thanks for your help