July 2016 Archives by date

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Starting: Fri Jul 1 00:47:12 CEST 2016
Ending: Sun Jul 31 19:54:34 CEST 2016
Messages: 775

[gmx-users] Atoms in the .top are not numbered consecutively from 1 Thanh Le
[gmx-users] Atoms in the .top are not numbered consecutively from 1 Justin Lemkul
[gmx-users] md with multiple ligands Thanh Le
[gmx-users] Failed to lock: pre.log OuyangYanhua
[gmx-users] md with multiple ligands Billy Williams-Noonan
[gmx-users] Query regarding all-atom simulations on 980 Ti GPUs Suhani Nagpal
[gmx-users] Energy between desired selected molecules Faezeh Pousaneh
[gmx-users] Query regarding all-atom simulations on 980 Ti GPUs Mark Abraham
[gmx-users] Energy between desired selected molecules Mark Abraham
[gmx-users] Water molecule can not be settled zeineb SI CHAIB
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] Autocorrelation function sun
[gmx-users] Autocorrelation function Mark Abraham
[gmx-users] md with multiple ligands Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 147, Issue 3 zeineb SI CHAIB
[gmx-users] Water molecule can not be settled‏ zeineb SI CHAIB
[gmx-users] Water molecule can not be settled‏ zeineb SI CHAIB
[gmx-users] Water molecule can not be settled‏ zeineb SI CHAIB
[gmx-users] Water molecule can not be settled‏ Mark Abraham
[gmx-users] Energy between desired selected molecules Faezeh Pousaneh
[gmx-users] Energy between desired selected molecules Justin Lemkul
[gmx-users] time in restarting job Marta Wisniewska
[gmx-users] time in restarting job Justin Lemkul
[gmx-users] Energy between desired selected molecules Mark Abraham
[gmx-users] Autocorrelation function sun
[gmx-users] Energy between desired selected molecules Faezeh Pousaneh
[gmx-users] Energy between desired selected molecules Justin Lemkul
[gmx-users] Contradiction beetwen Domain Decomposition in PME and the use of SPECBOND Олег Шавыкин
[gmx-users] fatal error in grompp roshanak starlight
[gmx-users] fatal error in grompp Justin Lemkul
[gmx-users] Contradiction beetwen Domain Decomposition in PME and the use of SPECBOND Justin Lemkul
[gmx-users] Energy between desired selected molecules Faezeh Pousaneh
[gmx-users] Energy between desired selected molecules Justin Lemkul
[gmx-users] Energy between desired selected molecules Faezeh Pousaneh
[gmx-users] Force filed of N2 (TraPPE) Fei Zhang
[gmx-users] Diffusion constant pari lotfi
[gmx-users] Diffusion constant pari lotfi
[gmx-users] Diffusion constant Justin Lemkul
[gmx-users] how to distance between COM of two groups of atoms? Ming Tang
[gmx-users] how to distance between COM of two groups of atoms? Justin Lemkul
[gmx-users] how to distance between COM of two groups of atoms? Ming Tang
[gmx-users] how to distance between COM of two groups of atoms? Justin Lemkul
[gmx-users] md with multiple ligands Billy Williams-Noonan
[gmx-users] Water molecule can not be settled Billy Williams-Noonan
[gmx-users] how to distance between COM of two groups of atoms? Ming Tang
[gmx-users] is there a way to get pullx.xvg and pullf.xvg from traj_comp.xtc? Ming Tang
[gmx-users] is there a way to get pullx.xvg and pullf.xvg from traj_comp.xtc? Ming Tang
[gmx-users] protein has broken after 100ns simulation Seera Suryanarayana
[gmx-users] charge assign elham tazikeh
[gmx-users] No velocity and transitional kinetic energy calculated from gmx traj Bui, Tai
[gmx-users] protein has broken after 100ns simulation Dries Van Rompaey
[gmx-users] No velocity and transitional kinetic energy calculated from gmx traj Justin Lemkul
[gmx-users] is there a way to get pullx.xvg and pullf.xvg from traj_comp.xtc? Justin Lemkul
[gmx-users] md with multiple ligands Justin Lemkul
[gmx-users] Issue with number of cores khourshaeishargh at mech.sharif.ir
[gmx-users] charge assign Justin Lemkul
[gmx-users] g_mmpbsa python script error Amali Guruge
[gmx-users] g_mmpbsa python script error Justin Lemkul
[gmx-users] protein has broken after 100ns simulation sun
[gmx-users] Fwd: Problem in applying walls in the z direction Stephen Chan
[gmx-users] Fwd: Problem in applying walls in the z direction Justin Lemkul
[gmx-users] Fwd: Problem in applying walls in the z direction Stephen Chan
[gmx-users] Fwd: Problem in applying walls in the z direction Justin Lemkul
[gmx-users] Fwd: Problem in applying walls in the z direction Stephen Chan
[gmx-users] md with multiple ligands Billy Williams-Noonan
[gmx-users] is there a way to get pullx.xvg and pullf.xvg from traj_comp.xtc? Ming Tang
[gmx-users] is there a way to get pullx.xvg and pullf.xvg from traj_comp.xtc? Justin Lemkul
[gmx-users] Fwd: Problem in applying walls in the z direction Stephen Chan
[gmx-users] convert amber topology and coordinates files into gromacs topology Ming Tang
[gmx-users] convert amber topology and coordinates files into gromacs topology Pedro Lacerda
[gmx-users] SETTLE constraint amitbehra at chemeng.iisc.ernet.in
[gmx-users] SETTLE constraint Mark Abraham
[gmx-users] acetaminophen charges elham tazikeh
[gmx-users] Water molecule can not be settled‏ zeineb SI CHAIB
[gmx-users] No velocity and transitional kinetic energy calculated from gmx traj Bui, Tai
[gmx-users] Recognizing the Fe-S bond in Hemprotein by pdb2gmx zeineb SI CHAIB
[gmx-users] On CHARMM angle bending potential Mr Bernard Ramos
[gmx-users] Water molecule can not be settled‏ Justin Lemkul
[gmx-users] acetaminophen charges Justin Lemkul
[gmx-users] Water molecule can not be settled zeineb SI CHAIB
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] Water molecule can not be settled Mark Abraham
[gmx-users] gromacs installation roshanak starlight
[gmx-users] GXM 512 allocation issue Carlo Camilloni
[gmx-users] GXM 512 allocation issue Mark Abraham
[gmx-users] gromacs installation Mark Abraham
[gmx-users] On CHARMM angle bending potential David van der Spoel
[gmx-users] binding free energy Alexander Alexander
[gmx-users] Diffusion constant pari lotfi
[gmx-users] binding free energy André Farias de Moura
[gmx-users] Diffusion constant David van der Spoel
[gmx-users] On CHARMM angle bending potential Mr Bernard Ramos
[gmx-users] gromacs installation roshanak starlight
[gmx-users] gromacs installation Mark Abraham
[gmx-users] gromacs installation roshanak starlight
[gmx-users] gromacs installation roshanak starlight
[gmx-users] binding free energy Billy Williams-Noonan
[gmx-users] binding free energy Billy Williams-Noonan
[gmx-users] Values for pcon & ncon in G_mmpbsa Amali Guruge
[gmx-users] Values for pcon & ncon in G_mmpbsa Sarath Chandra
[gmx-users] gromcas installation Seera Suryanarayana
[gmx-users] How to define coordinates of protein and simulation box in the pulling simulation automatically? Hassan Aaryapour
[gmx-users] binding free energy Alexander Alexander
[gmx-users] nwall=2 calculation Stephen Chan
[gmx-users] Accelerated MD in GROMACS James Starlight
[gmx-users] Accelerated MD in GROMACS Mark Abraham
[gmx-users] Porting to Gromacs of Parmbsc1 Elisa
[gmx-users] lipid bilayer separation xy21hb
[gmx-users] lipid bilayer separation xy21hb
[gmx-users] lipid bilayer separation xy21hb
[gmx-users] Porting to Gromacs of Parmbsc1 Mark Abraham
[gmx-users] Porting to Gromacs of Parmbsc1 Alan
[gmx-users] lipid bilayer separation Mark Abraham
[gmx-users] lipid bilayer separation xy21hb
[gmx-users] lipid bilayer separation Justin Lemkul
[gmx-users] How to define coordinates of protein and simulation box in the pulling simulation automatically? Justin Lemkul
[gmx-users] Accelerated MD in GROMACS James Starlight
[gmx-users] lipid bilayer separation Felipe Merino
[gmx-users] Accelerated MD in GROMACS Mark Abraham
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Susan Chacko
[gmx-users] Accelerated MD in GROMACS James Starlight
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Mark Abraham
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Mark Abraham
[gmx-users] GMX Density – Setting Start and End Position Along Z Axis ALEXANDER DHALIWAL
[gmx-users] Ligand hybridization Chetan Puri
[gmx-users] replacing lipid molecules with cholesterol amitbehra at chemeng.iisc.ernet.in
[gmx-users] Accelerated MD in GROMACS Catarina A. Carvalheda dos Santos
[gmx-users] GMX Density – Setting Start and End Position Along Z Axis Justin Lemkul
[gmx-users] Ligand hybridization Justin Lemkul
[gmx-users] GMX Density – Setting Start and End Position Along Z Axis ALEXANDER DHALIWAL
[gmx-users] mdrun rerun no forces Sebastian
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Szilárd Páll
[gmx-users] Accelerated MD in GROMACS Szilárd Páll
[gmx-users] mdrun rerun no forces Mark Abraham
[gmx-users] Flat-bottomed potential for Sampling in particular volume Lukas Zimmermann
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Susan Chacko
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Susan Chacko
[gmx-users] The question of performance of GPU acceleration DeChang Li
[gmx-users] Accelerated MD in GROMACS James Starlight
[gmx-users] Ligand hybridization sun
[gmx-users] Selection of molecule close to interface in trajectory Giuseppe Léonardo Licari
[gmx-users] lipid pulling xy21hb
[gmx-users] lipid pulling xy21hb
[gmx-users] Selection of molecule close to interface in trajectory Mark Abraham
[gmx-users] The question of performance of GPU acceleration Szilárd Páll
[gmx-users] The question of performance of GPU acceleration Szilárd Páll
[gmx-users] Problem in umbrella sampling for PMF calculation Shi Li
[gmx-users] Gromacs 5.0 benchmarks Kevin Chen
[gmx-users] Gromacs 5.0 benchmarks Kevin Chen
[gmx-users] Basic Understanding about Gromacs C library Murilo Kramar
[gmx-users] Ligand hybridization Chetan Puri
[gmx-users] Analyzing With Indices Created By GMX Select ALEXANDER DHALIWAL
[gmx-users] DSSP Sanket Ghawali
[gmx-users] Fw: lipid pulling xy21hb
[gmx-users] Fw: lipid pulling xy21hb
[gmx-users] Copernicus Kalev Takkis
[gmx-users] mdrun rerun to large frame numbers Sebastian
[gmx-users] DSSP Mark Abraham
[gmx-users] mdrun rerun to large frame numbers Mark Abraham
[gmx-users] lipid pulling Probelm xy21hb
[gmx-users] Calculation of non bonded interaction Praveen Kumar
[gmx-users] GMX Density – Setting Start and End Position Along Z Axis Justin Lemkul
[gmx-users] lipid pulling Justin Lemkul
[gmx-users] Problem in umbrella sampling for PMF calculation Justin Lemkul
[gmx-users] Ligand hybridization Justin Lemkul
[gmx-users] Analyzing With Indices Created By GMX Select Justin Lemkul
[gmx-users] Calculation of non bonded interaction Justin Lemkul
[gmx-users] How to build caps for my peptide termini? Apramita Chand
[gmx-users] lipid pulling xy21hb
[gmx-users] mdrun rerun to large frame numbers Sebastian
[gmx-users] Problem with Group and Verlet cut -off scheme Ben Tam
[gmx-users] mdrun rerun to large frame numbers Mark Abraham
[gmx-users] Surface tension calculation for organic monolayer gozde ergin
[gmx-users] Problem with Group and Verlet cut -off scheme Mark Abraham
[gmx-users] gmx_saxs sampling frequency Evan Lowry
[gmx-users] Surface tension calculation for organic monolayer David van der Spoel
[gmx-users] Residue Numbers Amali Guruge
[gmx-users] Surface tension calculation for organic monolayer gozde ergin
[gmx-users] Surface tension calculation for organic monolayer Naga Rajesh Tummala
[gmx-users] Surface tension calculation for organic monolayer David van der Spoel
[gmx-users] binding free energy Billy Williams-Noonan
[gmx-users] new residue went into crash during energy minimization Wang Tao
[gmx-users] Position restraints for water during EM Gregory Poon
[gmx-users] Position restraints for water during EM Tsjerk Wassenaar
[gmx-users] Multi GPU Workstation with 4 Way SLI Nikhil Maroli
[gmx-users] Hbond occupancy Amali Guruge
[gmx-users] eneconv and timestamps Matthias Ernst
[gmx-users] Problem with Group and Verlet cut -off scheme Ben Tam
[gmx-users] gmx_saxs sampling frequency Yu Ogawa
[gmx-users] Hbond occupancy Erik Marklund
[gmx-users] Multi GPU Workstation with 4 Way SLI Kutzner, Carsten
[gmx-users] Selection of cylindrical shape RAHUL KUMAR bs12b058
[gmx-users] Hbond occupancy Amali Guruge
[gmx-users] Hbond occupancy Justin Lemkul
[gmx-users] new residue went into crash during energy minimization Justin Lemkul
[gmx-users] Residue Numbers Justin Lemkul
[gmx-users] gmx_saxs sampling frequency Evan Lowry
[gmx-users] lipid pulling xy21hb
[gmx-users] lipid pulling xy21hb
[gmx-users] Problem with Group and Verlet cut -off scheme Mark Abraham
[gmx-users] Problem with Group and Verlet cut -off scheme Ben Tam
[gmx-users] Problem with Group and Verlet cut -off scheme Justin Lemkul
[gmx-users] Problem with Group and Verlet cut -off scheme Ben Tam
[gmx-users] Problem with Group and Verlet cut -off scheme Justin Lemkul
[gmx-users] Problem with Group and Verlet cut -off scheme Ben Tam
[gmx-users] adsoption of peptide into surface Alexander Alexander
[gmx-users] adsoption of peptide into surface Justin Lemkul
[gmx-users] Problem with Group and Verlet cut -off scheme Justin Lemkul
[gmx-users] gmx_ana_selcolletion_t definition MURILO GABARDO KRAMAR
[gmx-users] Problem with Group and Verlet cut -off scheme Ben Tam
[gmx-users] Problem with Group and Verlet cut -off scheme Justin Lemkul
[gmx-users] Problem with Group and Verlet cut -off scheme Mark Abraham
[gmx-users] Problem with Group and Verlet cut -off scheme Ben Tam
[gmx-users] problem with pull code xy21hb
[gmx-users] problem with pull code xy21hb
[gmx-users] Problem with Group and Verlet cut -off scheme Mark Abraham
[gmx-users] pulling simulation Hassan Aaryapour
[gmx-users] How to run MD simulation remotely charles k.davis
[gmx-users] How to run MD simulation remotely Nikhil Maroli
[gmx-users] How to run MD simulation remotely Erik Marklund
[gmx-users] gmx distance amitbehra at chemeng.iisc.ernet.in
[gmx-users] gmx distance Evan Lowry
[gmx-users] pulling simulation Justin Lemkul
[gmx-users] Fw: The average number of H-bonds Mahboobeh Eslami
[gmx-users] Fw: The average number of H-bonds David van der Spoel
[gmx-users] Error while running protein-carbohydrate simulation Deep Bhattacharya
[gmx-users] Error while running protein-carbohydrate simulation Evan Lowry
[gmx-users] Error while running protein-carbohydrate simulation Deep Bhattacharya
[gmx-users] Error while running protein-carbohydrate simulation Evan Lowry
[gmx-users] Error while running protein-carbohydrate simulation Deep Bhattacharya
[gmx-users] Error while running protein-carbohydrate simulation Deep Bhattacharya
[gmx-users] Error while running protein-carbohydrate simulation Evan Lowry
[gmx-users] Error while running protein-carbohydrate simulation Deep Bhattacharya
[gmx-users] Error while running protein-carbohydrate simulation Evan Lowry
[gmx-users] Error while running protein-carbohydrate simulation Deep Bhattacharya
[gmx-users] Error while running protein-carbohydrate simulation Justin Lemkul
[gmx-users] the treatments of the periodic boundary condition 15110700076 at fudan.edu.cn
[gmx-users] Any script available? Mohsen Ramezanpour
[gmx-users] Regarding periodic boundary condition amitbehra at chemeng.iisc.ernet.in
[gmx-users] ATB server (charge assign) elham tazikeh
[gmx-users] GRID-MAT- area per lipid calculation amitbehra at chemeng.iisc.ernet.in
[gmx-users] strange GPU performance Albert
[gmx-users] gmx_saxs sampling frequency Yu Ogawa
[gmx-users] problem with pull code xy21hb
[gmx-users] problem with pull code xy21hb
[gmx-users] problem with pull code xy21hb
[gmx-users] strange GPU performance Szilárd Páll
[gmx-users] gmx insert-molecules Dave Michael
[gmx-users] the treatments of the periodic boundary condition Justin Lemkul
[gmx-users] Regarding periodic boundary condition Justin Lemkul
[gmx-users] ATB server (charge assign) Justin Lemkul
[gmx-users] GRID-MAT- area per lipid calculation Justin Lemkul
[gmx-users] gmx insert-molecules Justin Lemkul
[gmx-users] gmx insert-molecules Dave Michael
[gmx-users] gmx insert-molecules Justin Lemkul
[gmx-users] gmx insert-molecules Dave Michael
[gmx-users] gmx_saxs sampling frequency Evan Lowry
[gmx-users] strange GPU performance Mark Abraham
[gmx-users] Using ATB to generate valid topologies ALEXANDER DHALIWAL
[gmx-users] strange GPU performance Albert
[gmx-users] GROMACS 2016 release candidate available! Mark Abraham
[gmx-users] command line issue Albert
[gmx-users] command line issue Mark Abraham
[gmx-users] command line issue Albert
[gmx-users] Error running MPI: Open MPI does not support recursive calls of mpiexec Benjamin Joseph Coscia
[gmx-users] Error running MPI: Open MPI does not support recursive calls of mpiexec Mark Abraham
[gmx-users] command line issue Mark Abraham
[gmx-users] command line issue Florent Hédin
[gmx-users] command line issue Albert
[gmx-users] command line issue Albert
[gmx-users] gromacs.org_gmx-users at maillist.sys.kth.se Morten Slyngborg
[gmx-users] command line issue Florent Hédin
[gmx-users] gromacs.org_gmx-users mailing list submissions Morten Slyngborg
[gmx-users] command line issue Mark Abraham
[gmx-users] truncating LJ potentials Irem Altan
[gmx-users] Non-uniform structure of water around H2S Badmos, Sakiru
[gmx-users] truncating LJ potentials Mark Abraham
[gmx-users] NPT equilibration Deep Bhattacharya
[gmx-users] NPT equilibration Mark Abraham
[gmx-users] NPT equilibration Deep Bhattacharya
[gmx-users] NPT equilibration Justin Lemkul
[gmx-users] NPT equilibration Deep Bhattacharya
[gmx-users] NPT equilibration Justin Lemkul
[gmx-users] Parameterizing Dummy Atoms (4fd) Benjamin Joseph Coscia
[gmx-users] couple-moltype in FEP Alexander Alexander
[gmx-users] Fwd: Re: Gromacs MD simulation query charles k.davis
[gmx-users] gromacs.org_gmx-users Digest, Vol 146, Issue 157 muhammad tahir ayub
[gmx-users] couple-moltype in FEP Hannes Loeffler
[gmx-users] couple-moltype in FEP Hannes Loeffler
[gmx-users] calculate the dihed torsion energy 王珍
[gmx-users] couple-moltype in FEP Alexander Alexander
[gmx-users] couple-moltype in FEP Hannes Loeffler
[gmx-users] couple-moltype in FEP Hannes Loeffler
[gmx-users] GPU job frequently failed Albert
[gmx-users] couple-moltype in FEP Alexander Alexander
[gmx-users] calculate the dihed torsion energy David van der Spoel
[gmx-users] calculate the dihed torsion energy Justin Lemkul
[gmx-users] Using ATB to generate valid topologies Justin Lemkul
[gmx-users] Using ATB to generate valid topologies David van der Spoel
[gmx-users] couple-moltype in FEP Hannes Loeffler
[gmx-users] strange GPU performance Szilárd Páll
[gmx-users] couple-moltype in FEP Alexander Alexander
[gmx-users] problem with pull code xy21hb
[gmx-users] problem with pull code xy21hb
[gmx-users] Which computer yields the highest performance per price Morten
[gmx-users] Decomposition in minimization step Yeganeh Entezari
[gmx-users] Which computer yields the highest performance per price Mark Abraham
[gmx-users] Which computer yields the highest performance per price Mark Abraham
[gmx-users] Decomposition in minimization step Mark Abraham
[gmx-users] Which computer yields the highest performance per price David van der Spoel
[gmx-users] Problems with TI on GPUs Yannic Alber
[gmx-users] Problems with TI on GPUs Mark Abraham
[gmx-users] Problems with TI on GPUs Yannic Alber
[gmx-users] Problems with TI on GPUs Mark Abraham
[gmx-users] Problems with TI on GPUs Mark Abraham
[gmx-users] gmx_ana_selcolletion_t definition MURILO GABARDO KRAMAR
[gmx-users] truncating LJ potentials Irem Altan
[gmx-users] gmx_ana_selcolletion_t definition Mark Abraham
[gmx-users] truncating LJ potentials Mark Abraham
[gmx-users] Question: KALP-15 in DPPC tutorial Tapash, Arifuzzaman
[gmx-users] Question: KALP-15 in DPPC tutorial Justin Lemkul
[gmx-users] problem with pull code Justin Lemkul
[gmx-users] periodic boundary conditions Mohsen Ramezanpour
[gmx-users] truncating LJ potentials Irem Altan
[gmx-users] System blowing up in final MD run Deep Bhattacharya
[gmx-users] How to solvate particular regions in simulation box Venkat Reddy
[gmx-users] How to solvate particular regions in simulation box Tsjerk Wassenaar
[gmx-users] System blowing up in final MD run Tsjerk Wassenaar
[gmx-users] Energy between desired selected molecules Faezeh Pousaneh
[gmx-users] Energy between desired selected molecules Mark Abraham
[gmx-users] truncating LJ potentials Mark Abraham
[gmx-users] periodic boundary conditions Mark Abraham
[gmx-users] Problems with TI on GPUs Wahab Mirco
[gmx-users] Decomposition in minimization step Mark Abraham
[gmx-users] Decomposition in minimization step Mark Abraham
[gmx-users] [pairs] vs [exclusions] Peter Kroon
[gmx-users] Energy between desired selected molecules Faezeh Pousaneh
[gmx-users] Restart corrupted run Mehrnoosh Hazrati
[gmx-users] Restart corrupted run gozde ergin
[gmx-users] Restart corrupted run Mark Abraham
[gmx-users] Restart corrupted run Mark Abraham
[gmx-users] Energy between desired selected molecules Mark Abraham
[gmx-users] [pairs] vs [exclusions] Mark Abraham
[gmx-users] [pairs] vs [exclusions] Peter Kroon
[gmx-users] [pairs] vs [exclusions] XAvier Periole
[gmx-users] System blowing up in final MD run Deep Bhattacharya
[gmx-users] System blowing up in final MD run Justin Lemkul
[gmx-users] System blowing up in final MD run Deep Bhattacharya
[gmx-users] System blowing up in final MD run Deep Bhattacharya
[gmx-users] System blowing up in final MD run Justin Lemkul
[gmx-users] Surface tension calculation for organic monolayer gozde ergin
[gmx-users] System blowing up in final MD run Deep Bhattacharya
[gmx-users] System blowing up in final MD run Justin Lemkul
[gmx-users] Problems with TI on GPUs Szilárd Páll
[gmx-users] System blowing up in final MD run Deep Bhattacharya
[gmx-users] Using ATB to generate valid topologies XAvier Periole
[gmx-users] Using ATB to generate valid topologies Justin Lemkul
[gmx-users] [pairs] vs [exclusions] Peter Kroon
[gmx-users] How to solvate particular regions in simulation box Venkat Reddy
[gmx-users] Using ATB to generate valid topologies XAvier Periole
[gmx-users] [pairs] vs [exclusions] Mark Abraham
[gmx-users] Error message in Energy minimization Deep Bhattacharya
[gmx-users] Using ATB to generate valid topologies Justin Lemkul
[gmx-users] Surface tension calculation for organic monolayer Evan Lowry
[gmx-users] Surface tension calculation for organic monolayer gozde ergin
[gmx-users] Error message in Energy minimization Evan Lowry
[gmx-users] Error message in Energy minimization Deep Bhattacharya
[gmx-users] periodic boundary conditions Mohsen Ramezanpour
[gmx-users] Surface tension calculation for organic monolayer Evan Lowry
[gmx-users] Error message in Energy minimization Evan Lowry
[gmx-users] Error message in Energy minimization Deep Bhattacharya
[gmx-users] gmx_ana_selcolletion_t definition MURILO GABARDO KRAMAR
[gmx-users] Error message while running energy minimization Deep Bhattacharya
[gmx-users] GROMACS 2016 release candidate available! Téletchéa Stéphane
[gmx-users] Error message while running energy minimization Justin Lemkul
[gmx-users] Error message while running energy minimization Deep Bhattacharya
[gmx-users] Error message while running energy minimization Justin Lemkul
[gmx-users] Error message while running energy minimization Deep Bhattacharya
[gmx-users] Error message while running energy minimization Justin Lemkul
[gmx-users] Error message while running energy minimization Deep Bhattacharya
[gmx-users] Error message while running energy minimization Justin Lemkul
[gmx-users] Error message while running energy minimization Deep Bhattacharya
[gmx-users] Error message while running energy minimization Justin Lemkul
[gmx-users] Error message while running energy minimization Deep Bhattacharya
[gmx-users] Error message while running energy minimization Deep Bhattacharya
[gmx-users] Harmonic restraint in FEP Alexander Alexander
[gmx-users] Harmonic restraint in FEP Justin Lemkul
[gmx-users] Correct .mdp file for Amber99SB-ILDN ff implementation in Gromacs Mohsen Ramezanpour
[gmx-users] Harmonic restraint in FEP Alexander Alexander
[gmx-users] Harmonic restraint in FEP Justin Lemkul
[gmx-users] Harmonic restraint in FEP Alexander Alexander
[gmx-users] Harmonic restraint in FEP Justin Lemkul
[gmx-users] temperature of a single water molecule Ali Mohyeddin
[gmx-users] Using ATB to generate valid topologies XAvier Periole
[gmx-users] Read from XTC file Saumyak Mukherjee
[gmx-users] Correct .mdp file for Amber99SB-ILDN ff implementation in Gromacs João Henriques
[gmx-users] [pairs] vs [exclusions] Peter Kroon
[gmx-users] Read from XTC file Florent Hédin
[gmx-users] PRACE benchmarks Adam Huffman
[gmx-users] PRACE benchmarks Mark Abraham
[gmx-users] electron density by gmx density amitbehra at chemeng.iisc.ernet.in
[gmx-users] electron density by gmx density Justin Lemkul
[gmx-users] temperature of a single water molecule Justin Lemkul
[gmx-users] Correct .mdp file for Amber99SB-ILDN ff implementation in Gromacs Justin Lemkul
[gmx-users] Read from XTC file Saumyak Mukherjee
[gmx-users] PRACE benchmarks Adam Huffman
[gmx-users] PRACE benchmarks Mark Abraham
[gmx-users] gmx_ana_selcolletion_t definition MURILO GABARDO KRAMAR
[gmx-users] Correct .mdp file for Amber99SB-ILDN ff implementation in Gromacs Mohsen Ramezanpour
[gmx-users] periodic boundary conditions Mohsen Ramezanpour
[gmx-users] PRACE benchmarks Dimitris Dellis
[gmx-users] Correct .mdp file for Amber99SB-ILDN ff implementation in Gromacs Justin Lemkul
[gmx-users] Supercomputing facility sun
[gmx-users] GPU Not Being Utilized during mdrun Vito Spadavecchio
[gmx-users] GPU Not Being Utilized during mdrun Smith, Micholas D.
[gmx-users] GPU Not Being Utilized during mdrun Vito Spadavecchio
[gmx-users] Questions about OPLS force fields Dan Gil
[gmx-users] truncating LJ potentials Irem Altan
[gmx-users] GPU Not Being Utilized during mdrun Szilárd Páll
[gmx-users] Supercomputing facility André Farias de Moura
[gmx-users] GPU Not Being Utilized during mdrun Vito Spadavecchio
[gmx-users] Problems with TI on GPUs Yannic Alber
[gmx-users] (no subject) roshanak starlight
[gmx-users] question about step 3 of kalp-15 in dppc roshanak starlight
[gmx-users] Pulling: Fix the position of a molecule Daniele Veclani
[gmx-users] GPU Not Being Utilized during mdrun Justin Lemkul
[gmx-users] question about step 3 of kalp-15 in dppc Justin Lemkul
[gmx-users] truncating LJ potentials Mark Abraham
[gmx-users] periodic boundary conditions Mark Abraham
[gmx-users] Question: how fix protein without loops Ann Vakhrusheva
[gmx-users] Question: how fix protein without loops Mark Abraham
[gmx-users] question about step 3 of kalp-15 in dppc roshanak starlight
[gmx-users] g_select, only 'one' water within z>=10 and z<=10.1 Faezeh Pousaneh
[gmx-users] question about step 3 of kalp-15 in dppc Justin Lemkul
[gmx-users] g_select, only 'one' water within z>=10 and z<=10.1 Justin Lemkul
[gmx-users] question about step 3 of kalp-15 in dppc roshanak starlight
[gmx-users] Supercomputing facility sun
[gmx-users] question about step 3 of kalp-15 in dppc Justin Lemkul
[gmx-users] g_select, only 'one' water within z>=10 and z<=10.1 Faezeh Pousaneh
[gmx-users] question about step 3 of kalp-15 in dppc roshanak starlight
[gmx-users] question about step 3 of kalp-15 in dppc Justin Lemkul
[gmx-users] number of water molecule Alexander Alexander
[gmx-users] mdrun bailing out on mpi cluster Gregory, Andrew J.
[gmx-users] question about step 3 of kalp-15 in dppc roshanak starlight
[gmx-users] question about step 3 of kalp-15 in dppc Justin Lemkul
[gmx-users] number of water molecule Justin Lemkul
[gmx-users] g_select, only 'one' water within z>=10 and z<=10.1 Mark Abraham
[gmx-users] GPU Not Being Utilized during mdrun Vito Spadavecchio
[gmx-users] number of water molecule Alexander Alexander
[gmx-users] question about step 3 of kalp-15 in dppc roshanak starlight
[gmx-users] question about step 3 of kalp-15 in dppc Justin Lemkul
[gmx-users] number of water molecule Justin Lemkul
[gmx-users] Question: how fix protein without loops Ann Vakhrusheva
[gmx-users] Question: how fix protein without loops Ann Vakhrusheva
[gmx-users] number of water molecule Alexander Alexander
[gmx-users] number of water molecule Justin Lemkul
[gmx-users] SLI bridge is essential for GROMACS GPU Simulation ? Nikhil Maroli
[gmx-users] Facing poblem in enegy minimization step Swagata Patra
[gmx-users] Facing poblem in enegy minimization step Tsjerk Wassenaar
[gmx-users] Facing poblem in enegy minimization step Swagata Patra
[gmx-users] SLI bridge is essential for GROMACS GPU Simulation ? Mark Abraham
[gmx-users] Facing poblem in enegy minimization step Tsjerk Wassenaar
[gmx-users] mdrun bailing out on mpi cluster Mark Abraham
[gmx-users] Questions about OPLS force fields Mark Abraham
[gmx-users] How to fix molecules in gromacs? Daniele Veclani
[gmx-users] Solvate with water roshanak starlight
[gmx-users] Solvate with water Justin Lemkul
[gmx-users] How to fix molecules in gromacs? Justin Lemkul
[gmx-users] Electrostatic Potential in confinment Alireza Moradzadeh
[gmx-users] GPU Not Being Utilized during mdrun Vito Spadavecchio
[gmx-users] GPU Not Being Utilized during mdrun Mark Abraham
[gmx-users] Electrostatic Potential in confinment David van der Spoel
[gmx-users] g_select, only 'one' water within z>=10 and z<=10.1 Faezeh Pousaneh
[gmx-users] How to fix molecules in gromacs? Daniele Veclani
[gmx-users] g_select, only 'one' water within z>=10 and z<=10.1 Mark Abraham
[gmx-users] How to fix molecules in gromacs? Justin Lemkul
[gmx-users] Average simulation time for correct surface tension gozde ergin
[gmx-users] Cutting simulatio box Faezeh Pousaneh
[gmx-users] Cutting simulatio box Tsjerk Wassenaar
[gmx-users] Cutting simulatio box Faezeh Pousaneh
[gmx-users] Cutting simulatio box Tsjerk Wassenaar
[gmx-users] number of harmonic restraint Alexander Alexander
[gmx-users] water transport using CTRW model- Nikhil Maroli
[gmx-users] Cutting simulatio box Faezeh Pousaneh
[gmx-users] trouble using tables with 5.1 XAvier Periole
[gmx-users] trouble using tables with 5.1 Mark Abraham
[gmx-users] Reading Force field Ben Tam
[gmx-users] Reading Force field Mark Abraham
[gmx-users] Plus / Minus sign in rtp file Li, Shi
[gmx-users] Plus / Minus sign in rtp file Justin Lemkul
[gmx-users] Average simulation time for correct surface tension Justin Lemkul
[gmx-users] Average simulation time for correct surface tension gozde ergin
[gmx-users] Reading Force field Ben Tam
[gmx-users] Average simulation time for correct surface tension Justin Lemkul
[gmx-users] Reading Force field Justin Lemkul
[gmx-users] 5.1.2 doesn't support GTX1080? Albert
[gmx-users] Plus / Minus sign in rtp file Mark Abraham
[gmx-users] 5.1.2 doesn't support GTX1080? Mark Abraham
[gmx-users] Average simulation time for correct surface tension gozde ergin
[gmx-users] Average simulation time for correct surface tension gozde ergin
[gmx-users] hbond hydroxyl oxygen, both acceptor and donor? Jeremy T First
[gmx-users] hbond hydroxyl oxygen, both acceptor and donor? Justin Lemkul
[gmx-users] Average simulation time for correct surface tension Justin Lemkul
[gmx-users] hbond hydroxyl oxygen, both acceptor and donor? Jeremy T First
[gmx-users] 5.1.2 doesn't support GTX1080? Albert
[gmx-users] Generating Entropy from Umbrella Sampling Data Billy Williams-Noonan
[gmx-users] Fatal Error: Unknown bond_atomtype OS. Simulating membrane protein in DPC micelle. PLEASE HELP!!! Tapash, Arifuzzaman
[gmx-users] Generating Entropy from Umbrella Sampling Data David van der Spoel
[gmx-users] Query regarding the use of g_energy command to extract free energies #SUKRITI GUPTA#
[gmx-users] water permeation -using GROMACS Nikhil Maroli
[gmx-users] 5.1.2 doesn't support GTX1080? Mark Abraham
[gmx-users] Generating Entropy from Umbrella Sampling Data Billy Williams-Noonan
[gmx-users] water permeation -using GROMACS Chandan Choudhury
[gmx-users] hbond definition in simulations Joel Markgren
[gmx-users] hbond definition in simulations Justin Lemkul
[gmx-users] Fatal Error: Unknown bond_atomtype OS. Simulating membrane protein in DPC micelle. PLEASE HELP!!! Justin Lemkul
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Susan Chacko
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Susan Chacko
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Mark Abraham
[gmx-users] Gromacs 5.1.2 and OMP_NUM_THREADS Mark Abraham
[gmx-users] Generating Entropy from Umbrella Sampling Data David van der Spoel
[gmx-users] Generating Entropy from Umbrella Sampling Data Billy Williams-Noonan
[gmx-users] angle calculation Adamu, Aliyu
[gmx-users] Generating Entropy from Umbrella Sampling Data Billy Williams-Noonan
[gmx-users] Error in .rtp Entery Sanjay Singh
[gmx-users] "cudaEventElapsedTime failed in cu_event_elapsed: device not ready" error Zekeriya DUZGUN
[gmx-users] angle calculation Justin Lemkul
[gmx-users] Error in .rtp Entery Justin Lemkul
[gmx-users] Rerun a period of trajectory with more frequent output. Dd H
[gmx-users] Rerun a period of trajectory with more frequent output. Justin Lemkul
[gmx-users] Long Range dispersion correction with Lennard-Jones PME Joel Jose Montalvo Acosta
[gmx-users] Inclusion of new parameter/input file btreece at andrew.cmu.edu
[gmx-users] building 5.1.2 gives error: ../../lib/libgromacs_mpi.so.1.2.0: undefined reference to `tMPI_ Henk Slim
[gmx-users] Help with installation of gromacs Omamuyovwi Akemu
[gmx-users] Long Range dispersion correction with Lennard-Jones PME David van der Spoel
[gmx-users] angle calculation Adamu, Aliyu
[gmx-users] pressure RMSD roshanak starlight
[gmx-users] Help with installation of gromacs Sidra Rafi
[gmx-users] Conversion between nonbonded charmm NBFIX and gromacs cross terms Marlon Sidore
[gmx-users] angle calculation Adamu, Aliyu
[gmx-users] angle calculation Justin Lemkul
[gmx-users] pressure RMSD Justin Lemkul
[gmx-users] Conversion between nonbonded charmm NBFIX and gromacs cross terms Justin Lemkul
[gmx-users] Conversion between nonbonded charmm NBFIX and gromacs cross terms Marlon Sidore
[gmx-users] Inclusion of new parameter/input file Mark Abraham
[gmx-users] nMoldyn with GROMACS Hartling, Kathryn
[gmx-users] md-vv and md gozde ergin
[gmx-users] Long Range dispersion correction with Lennard-Jones PME Joel Jose Montalvo Acosta
[gmx-users] gmx_ana_selcolletion_t definition MURILO GABARDO KRAMAR
[gmx-users] gmx_ana_selcolletion_t definition Justin Lemkul
[gmx-users] gmx_ana_selcolletion_t definition MURILO GABARDO KRAMAR
[gmx-users] Using SPC/E water with the OPLS force field Miguel Caro
[gmx-users] GROMACS 5.1.3 released Mark Abraham
[gmx-users] Long Range dispersion correction with Lennard-Jones PME Mark Abraham
[gmx-users] Using SPC/E water with the OPLS force field Justin Lemkul
[gmx-users] corrupted lines in alchemical Alexander Alexander
[gmx-users] md-vv and md Michael Shirts
[gmx-users] corrupted lines in alchemical Justin Lemkul
[gmx-users] corrupted lines in alchemical Alexander Alexander
[gmx-users] corrupted lines in alchemical Justin Lemkul
[gmx-users] mdrun -membed Sorry, parallel g_membed is not yet fully functional. -Mario
[gmx-users] corrupted lines in alchemical Alexander Alexander
[gmx-users] corrupted lines in alchemical Justin Lemkul
[gmx-users] mdrun -membed Sorry, parallel g_membed is not yet fully functional. Justin Lemkul
[gmx-users] "cudaEventElapsedTime failed in cu_event_elapsed: device not ready" error Mark Abraham
[gmx-users] vdw-type and DispCorr yunshi11 .
[gmx-users] vdw-type and DispCorr Mark Abraham
[gmx-users] Analyzing trajectory file always stops. yamashita.ryoto.82s at st.kyoto-u.ac.jp
[gmx-users] gmx potential and water Alex
[gmx-users] PSCP Kara.H at shell.com
[gmx-users] visualization of output of GridMAT-Md results kamakshi sikka
[gmx-users] Help with installation of gromacs Sun Iba
[gmx-users] visualization of output of GridMAT-Md results Justin Lemkul
[gmx-users] PSCP Justin Lemkul
[gmx-users] Analyzing trajectory file always stops. Justin Lemkul
[gmx-users] PSCP Michael Shirts
[gmx-users] DT Fatal Error still remaining Sanjay Singh
[gmx-users] SHAKE error gozde ergin
[gmx-users] DT Fatal Error still remaining Justin Lemkul
[gmx-users] SHAKE error Justin Lemkul
[gmx-users] SHAKE error gozde ergin
[gmx-users] SHAKE error Justin Lemkul
[gmx-users] SHAKE error gozde ergin
[gmx-users] Problem with Umbrella Sampling simulation Daniele Veclani
[gmx-users] Problem with Umbrella Sampling simulation Justin Lemkul
[gmx-users] angle calculation Mila Miletić
[gmx-users] Problem with Umbrella Sampling simulation Daniele Veclani
[gmx-users] Reference file for harmonic restraints CROUZY Serge 119222
[gmx-users] Reference file for harmonic restraints Justin Lemkul
[gmx-users] Problem with Umbrella Sampling simulation Justin Lemkul
[gmx-users] angle calculation Justin Lemkul
[gmx-users] Problem with Umbrella Sampling simulation Daniele Veclani
[gmx-users] Conversion between nonbonded charmm NBFIX and gromacs cross terms Kroon, P.C.
[gmx-users] angle calculation Mila Miletić
[gmx-users] gmx potential and water André Farias de Moura
[gmx-users] Conversion between nonbonded charmm NBFIX and gromacs cross terms Marlon Sidore
[gmx-users] mdrun -membed Sorry, parallel g_membed is not yet fully functional. -Mario
[gmx-users] mdrun -membed Sorry, parallel g_membed is not yet fully functional. Justin Lemkul
[gmx-users] custom position restraints Irem Altan
[gmx-users] custom position restraints Mark Abraham
[gmx-users] mdrun -membed Sorry, parallel g_membed is not yet fully functional. -Mario
[gmx-users] topology file format Chang Woon Jang
[gmx-users] load problem Stephen Chan
[gmx-users] topology file format Alex
[gmx-users] Amber14sb cutoff Thanh Le
[gmx-users] load problem Justin Lemkul
[gmx-users] Surface Distribution Function in gromacs Nash, Anthony
[gmx-users] load problem Stephen Chan
[gmx-users] load problem Justin Lemkul
[gmx-users] decomposition error Chang Woon Jang
[gmx-users] decomposition error Justin Lemkul
[gmx-users] decomposition error Chang Woon Jang
[gmx-users] decomposition error Justin Lemkul
[gmx-users] decomposition error Chang Woon Jang
[gmx-users] decomposition error Mark Abraham
[gmx-users] decomposition error Chang Woon Jang
[gmx-users] decomposition error Mark Abraham
[gmx-users] decomposition error Chang Woon Jang
[gmx-users] decomposition error Mark Abraham
[gmx-users] decomposition error Chang Woon Jang
[gmx-users] Gromacs and Software RDMA over Converged Ethernet -- is there a point ? Christopher Neale
[gmx-users] decomposition error: -rdd and -dds do not influence the number of ranks Chang Woon Jang
[gmx-users] Gromacs and Software RDMA over Converged Ethernet -- is there a point ? Mark Abraham
[gmx-users] decomposition error: -rdd and -dds do not influence the number of ranks Mark Abraham
[gmx-users] Electrostatic Potential in confinment Alireza Moradzadeh
[gmx-users] Analyzing trajectory file always stops. yamashita.ryoto.82s at st.kyoto-u.ac.jp
[gmx-users] Analyzing trajectory file always stops. Mark Abraham
[gmx-users] Error in energy groups masoud keramati
[gmx-users] Error in energy groups Justin Lemkul
[gmx-users] Error in energy groups masoud keramati
[gmx-users] Error in energy groups masoud keramati
[gmx-users] Regarding the topology of triethylammonium ion generated using TPPMKTOP soumadwip ghosh
[gmx-users] Masses and atomic radii for SASA Nash, Anthony
[gmx-users] Masses and atomic radii for SASA Marlon Sidore
[gmx-users] Regarding the topology of triethylammonium ion generated using TPPMKTOP Justin Lemkul
[gmx-users] mapping indices in posre/topol files to those in index files Irem Altan
[gmx-users] mapping indices in posre/topol files to those in index files Justin Lemkul
[gmx-users] mapping indices in posre/topol files to those in index files Irem Altan
[gmx-users] xtc_write() signals segmentation fault Murilo Kramar
[gmx-users] mapping indices in posre/topol files to those in index files Justin Lemkul
[gmx-users] viscosity pari lotfi
[gmx-users] mapping indices in posre/topol files to those in index files Irem Altan
[gmx-users] mapping indices in posre/topol files to those in index files Justin Lemkul
[gmx-users] viscosity Evan Lowry
[gmx-users] Domain decomposition Alexander Alexander
[gmx-users] Domain decomposition Mark Abraham
[gmx-users] building 5.1.2 gives error: ../../lib/libgromacs_mpi.so.1.2.0: undefined reference to `tMPI_ Mark Abraham
[gmx-users] building 5.1.2 gives error: ../../lib/libgromacs_mpi.so.1.2.0: undefined reference to `tMPI_ Mark Abraham
[gmx-users] xtc_write() signals segmentation fault Mark Abraham
[gmx-users] xtc_write() signals segmentation fault Mark Abraham
[gmx-users] Amber14sb cutoff Mark Abraham
[gmx-users] Amber14sb cutoff Mark Abraham
[gmx-users] sub: topology file error kalai sivam
[gmx-users] sub: topology file error Justin Lemkul
[gmx-users] hessian unit Ramachandran G
[gmx-users] Domain decomposition Alexander Alexander
[gmx-users] Domain decomposition Justin Lemkul
[gmx-users] How to check protein-ligand interaction pattern after completing simulaation. Swagata Patra
[gmx-users] How to check protein-ligand interaction pattern after completing simulaation. Justin Lemkul
[gmx-users] How to check protein-ligand interaction pattern after completing simulaation. Swagata Patra
[gmx-users] How to check protein-ligand interaction pattern after completing simulaation. Justin Lemkul
[gmx-users] How to check protein-ligand interaction pattern after completing simulaation. Swagata Patra
[gmx-users] How to check protein-ligand interaction pattern after completing simulaation. Justin Lemkul
[gmx-users] How to check protein-ligand interaction pattern after completing simulaation. Swagata Patra
[gmx-users] How to check protein-ligand interaction pattern after completing simulaation. Justin Lemkul
[gmx-users] Domain decomposition Alexander Alexander
[gmx-users] Domain decomposition Mark Abraham
[gmx-users] Domain decomposition Justin Lemkul
[gmx-users] Domain decomposition Alexander Alexander
[gmx-users] Domain decomposition Justin Lemkul
[gmx-users] Domain decomposition Alexander Alexander
[gmx-users] Domain decomposition Justin Lemkul
[gmx-users] grompp 5.1.3 chokes on multiple tau_p for semiisotropic pcoupltype David Dotson
[gmx-users] grompp 5.1.3 chokes on multiple tau_p for semiisotropic pcoupltype Justin Lemkul
[gmx-users] grompp 5.1.3 chokes on multiple tau_p for semiisotropic pcoupltype David Dotson
[gmx-users] grompp 5.1.3 chokes on multiple tau_p for semiisotropic pcoupltype Mark Abraham
[gmx-users] mpirun -npernode option gives gromcs slowdown unless used with mpirun option -np or gromacs option -ntomp 1 Christopher Neale
[gmx-users] mpirun -npernode option gives gromcs slowdown unless used with mpirun option -np or gromacs option -ntomp 1 Mark Abraham
[gmx-users] Membrane-protein MD BIJENDRA KHADKA
[gmx-users] Visualize Protein ligand complex Swagata Patra
[gmx-users] Visualize Protein ligand complex shrikant kaushik
[gmx-users] Visualize Protein ligand complex Swagata Patra
[gmx-users] Visualize Protein ligand complex Swagata Patra
[gmx-users] Visualize Protein ligand complex shrikant kaushik
[gmx-users] Visualize Protein ligand complex Swagata Patra
[gmx-users] Visualize Protein ligand complex shrikant kaushik
[gmx-users] sub: topology error... kalai sivam
[gmx-users] gmx gangle output Eleanor Turpin
[gmx-users] protein and ligand is not forming complex after completing simulation Swagata Patra
[gmx-users] protein and ligand is not forming complex after completing simulation jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] protein and ligand is not forming complex after completing simulation Swagata Patra
[gmx-users] protein and ligand is not forming complex after completing simulation Justin Lemkul
[gmx-users] protein and ligand is not forming complex after completing simulation Swagata Patra
[gmx-users] protein and ligand is not forming complex after completing simulation jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] protein and ligand is not forming complex after completing simulation Marlon Sidore
[gmx-users] protein and ligand is not forming complex after completing simulation jkrieger at mrc-lmb.cam.ac.uk
[gmx-users] sub: topology error... Justin Lemkul
[gmx-users] protein and ligand is not forming complex after completing simulation Felipe Merino
[gmx-users] Documentation of gmx velacc spectrum and gmx dos Hartling, Kathryn
[gmx-users] protein and ligand is not forming complex after completing simulation Swagata Patra
[gmx-users] protein and ligand is not forming complex after completing simulation Swagata Patra
[gmx-users] quick clarification on free energy and domain decomposition Michael Shirts
[gmx-users] protein and ligand is not forming complex after completing simulation Swagata Patra
[gmx-users] protein and ligand is not forming complex after completing simulation Marlon Sidore
[gmx-users] protein and ligand is not forming complex after completing simulation Swagata Patra
[gmx-users] protein and ligand is not forming complex after completing simulation Marlon Sidore
[gmx-users] LINCS error while running NVT equlibration Deep Bhattacharya
[gmx-users] Broken links on Gromacs Errors website Peter Vanya
[gmx-users] protein and ligand is not forming complex after completing simulation Justin Lemkul
[gmx-users] protein and ligand is not forming complex after completing simulation Justin Lemkul
[gmx-users] FEL - Invitation to view Sun Iba (via Google Drive)
[gmx-users] Free energy landscpae Sun Iba
[gmx-users] Very high energies after energy minimization Deep Bhattacharya
[gmx-users] Very high energies after energy minimization Evan Lowry
[gmx-users] Very high energies after energy minimization Deep Bhattacharya
[gmx-users] combining two trajectory files with different number of particles, Aliasghar Alizadeh-Mojarad
[gmx-users] Broken links on Gromacs Errors website Justin Lemkul
[gmx-users] Very high energies after energy minimization Justin Lemkul
[gmx-users] combining two trajectory files with different number of particles, Justin Lemkul
[gmx-users] Very high energies after energy minimization Deep Bhattacharya
[gmx-users] Very high energies after energy minimization Justin Lemkul
[gmx-users] combining two trajectory files with different number of particles, Aliasghar Alizadeh-Mojarad
[gmx-users] Magic number error in XTC file GAYATHRI S
[gmx-users] using only one socket Andrei Neamtu
[gmx-users] Magic number error in XTC file Tsjerk Wassenaar
[gmx-users] using only one socket Szilárd Páll
[gmx-users] Inverse CG MARTINI trajectory shivangi nangia
[gmx-users] viscosity pari lotfi
[gmx-users] Compilation problems after installing Gromacs 5.1.2 on Ubuntu 14.0 Martha Herreira
[gmx-users] Inverse CG MARTINI trajectory shivangi nangia
[gmx-users] GPU Not Being Utilized during mdrun Szilárd Páll
[gmx-users] Inverse CG MARTINI trajectory XAvier Periole
[gmx-users] Compilation problems after installing Gromacs 5.1.2 on Ubuntu 14.0 Mark Abraham
[gmx-users] Compilation problems after installing Gromacs 5.1.2 on Ubuntu 14.0 Mark Abraham
[gmx-users] GPU Not Being Utilized during mdrun Vito Spadavecchio
[gmx-users] Error from re-running the trajs Hongbin Wan
[gmx-users] using only one socket Andrei Neamtu
[gmx-users] The md-vv integrator and the choice of cutoffs Miguel Caro
[gmx-users] position restraints Irem Altan
[gmx-users] Error from re-running the trajs Mark Abraham
[gmx-users] Error from re-running the trajs Mark Abraham
[gmx-users] The md-vv integrator and the choice of cutoffs Mark Abraham
[gmx-users] position restraints Mark Abraham
[gmx-users] Error from re-running the trajs Hongbin Wan
[gmx-users] Documentation of gmx velacc spectrum and gmx dos David van der Spoel
[gmx-users] GPU Not Being Utilized during mdrun Szilárd Páll
[gmx-users] xtc_write() signals segmentation fault Murilo Kramar
[gmx-users] xtc_write() signals segmentation fault Mark Abraham
[gmx-users] xtc_write() signals segmentation fault Murilo Kramar
[gmx-users] xtc_write() signals segmentation fault Mark Abraham
[gmx-users] g_cluster or g_clustsize Seera Suryanarayana
[gmx-users] Magic number error in XTC file GAYATHRI S
[gmx-users] Preparing 30% TFE/Water simulation Sanket Ghawali
[gmx-users] ERROR MESSAGE DURING MINIMIZATION Omamuyovwi Akemu
[gmx-users] Preparing 30% TFE/Water simulation Tsjerk Wassenaar
[gmx-users] ERROR MESSAGE DURING MINIMIZATION Nikhil Maroli
[gmx-users] The md-vv integrator and the choice of cutoffs Miguel Caro
[gmx-users] g_cluster or g_clustsize Justin Lemkul
[gmx-users] The md-vv integrator and the choice of cutoffs Szilárd Páll
[gmx-users] ERROR MESSAGE DURING MINIMIZATION Omamuyovwi Akemu
[gmx-users] ERROR MESSAGE DURING MINIMIZATION Justin Lemkul
[gmx-users] Radial Distribution Function of DPPC Bilayer Nidhin Thomas
[gmx-users] Radial Distribution Function of DPPC Bilayer Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 147, Issue 178 Nidhin Thomas
[gmx-users] Registering on the website. Begay, Shanadeen
[gmx-users] Sigma and epsilon parameters for water and graphene atoms soumadwip ghosh
[gmx-users] gromacs electrostatic energy 王珍
[gmx-users] gromacs electrostatic energy David van der Spoel
[gmx-users] Sigma and epsilon parameters for water and graphene atoms soumadwip ghosh
[gmx-users] Sigma and epsilon parameters for water and graphene atoms Mark Abraham
[gmx-users] Sigma and epsilon parameters for water and graphene atoms Justin Lemkul
[gmx-users] Sigma and epsilon parameters for water and graphene atoms Mark Abraham
[gmx-users] Sigma and epsilon parameters for water and graphene atoms Mark Abraham
[gmx-users] advise ezequiel murina

Last message date: Sun Jul 31 19:54:34 CEST 2016
Archived on: Sun Jul 31 19:54:35 CEST 2016

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