[gmx-users] Cutting simulatio box

Faezeh Pousaneh fpoosaneh at gmail.com
Mon Jul 18 12:48:42 CEST 2016


Hi,

I have a Phase-separation in my simulation result. I need to find energy
between molecules at each phase. Can I cut the box into small boxes, each
having one phase, and then by extension the run (with similar setting as
original) obtain the energies at each phase?

Thank you!
Best regards


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