[gmx-users] Using SPC/E water with the OPLS force field
Miguel Caro
miguel.caro at aalto.fi
Thu Jul 21 19:15:44 CEST 2016
Hello everyone,
I am trying to use SPC/E water with the OPLS force field (I took the
OPLS itp file available from virtualchemistry.org). There is a number of
OW and HW atoms available (list below). At the moment I have chosen
opls_111 and opls_112, respectively. Is there any "standard" pair that
should be used? If I understand it correctly, the partial charges will
be overwritten by the molecule topology, but the LJ parameters will be
taken from the OPLS topology, so should I expect big differences if I
use, e.g. opls_116 and opls_117?
Thanks,
Miguel
#ifdef HEAVY_H
opls_111 OW 8 9.95140 -0.834 A 3.15061e-01
6.36386e-01
opls_112 HW 1 4.03200 0.417 A 0.00000e+00
0.00000e+00
opls_113 OW 8 9.95140 0.000 A 3.15365e-01
6.48520e-01
opls_114 HW 1 4.03200 0.520 A 0.00000e+00
0.00000e+00
opls_115 MW 0 0.00000 -1.040 D 0.00000e+00
0.00000e+00
opls_116 OW 8 9.95140 -0.820 A 3.16557e-01
6.50194e-01
opls_117 HW 1 4.03200 0.410 A 0.00000e+00
0.00000e+00
#else
opls_111 OW 8 15.99940 -0.834 A 3.15061e-01
6.36386e-01
opls_112 HW 1 1.00800 0.417 A 0.00000e+00
0.00000e+00
opls_113 OW 8 15.99940 0.000 A 3.15365e-01
6.48520e-01
opls_114 HW 1 1.00800 0.520 A 0.00000e+00
0.00000e+00
opls_115 MW 0 0.00000 -1.040 D 0.00000e+00
0.00000e+00
opls_116 OW 8 15.99940 -0.820 A 3.16557e-01
6.50194e-01
opls_117 HW 1 1.00800 0.410 A 0.00000e+00
0.00000e+00
#endif
opls_118 OW 8 15.99940 0.000 A 3.12000e-01
6.69440e-01
opls_119 HW 1 1.00800 0.000 A 0.00000e+00
0.00000e+00
--
*Dr. Miguel Caro*
/Postdoctoral researcher/
Department of Electrical Engineering and Automation,
and COMP Centre of Excellence in Computational Nanoscience
Aalto University, Finland
Personal email: *mcaroba at gmail.com*
Work: *miguel.caro at aalto.fi*
Website: http://mcaroba.dyndns.org
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