[gmx-users] Amber14sb cutoff

Thanh Le thanh.q.le at sjsu.edu
Fri Jul 22 22:03:57 CEST 2016


Hi everyone,
I would like to use amber14sb forcefield for my RNA-protein complex since it is frequently used in the literature to study RNA-protein complexes. However, I have trouble finding the cut-offs for rlist, rcoulomb, and rvdw (is there any more cutoff I have to change?); I read over this paper "ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB” to find the cutoffs, but sadly, I couldn’t find them.
I greatly appreciate your help.
Thanks,
Thanh Le


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