[gmx-users] position restraints

Irem Altan irem.altan at duke.edu
Thu Jul 28 21:19:56 CEST 2016


Hi,

When I define force constants for position restraints, are the axes x, y, and z fixed according to the box/unit cell? Is there a way to change them for each protein atom to achieve the most general form of a harmonic potential?:

V = 1/2*k11*x^2 + 1/2*k11*x^2 + 1/2*k11*x^2 + k12*x*y + k13*x*z + k23*y*z

Best,
Irem


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