[gmx-users] Md simulation trajectory Analysis.

[maria khan]

Dear Justin Lemkul..
Analysing trajectories of Md simulation,,how the H-bonds can be
analysed..if after minimization the software has once ignored the
H-bonds..??
Secondly how can we rename the H atoms by the gromacs conventional
system.Guide me in renaming H atoms of His residue according to conventions?
Maria khan
regards and thank.