[gmx-users] Fwd: Error-File must be an ascii script

RAHUL SURESH drrahulsuresh at gmail.com
Tue Nov 15 09:09:02 CET 2016


Thank you. Let me check my cluster documentation. Anyway you can help me to
correct my script?

On Tue, 15 Nov 2016 at 1:35 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> The error message is probably exactly right - you've incorrectly specified
> the required argument to mpirun -np. This is not a gromacs problem - check
> your script and consult your cluster's documentation.
>
> Mark
>
> On Tue, 15 Nov 2016 05:59 RAHUL SURESH <drrahulsuresh at gmail.com> wrote:
>
> > I want to run my .tpr file in cluster. I have my script file and tpr file
> > in a separate folder  in cluster. But it ends up with the error
> >
> > */var/spool/torque/mom_priv/jobs/25552.ramanujam.hpc.org.SC
> > <http://25552.ramanujam.hpc.org.SC>: line 8: 10: command not found*
> >
> >
> *----------------------------------------------------------------------------*
> > *Open MPI has detected that a parameter given to a command line*
> > *option does not match the expected format:*
> >
> > *  Option: np*
> > *  Param:  gmx_mpi*
> >
> > *This is frequently caused by omitting to provide the parameter*
> > *to an option that requires one. Please check the command line and try
> > again.*
> >
> >
> *----------------------------------------------------------------------------*
> >
> >
> > here i have attached my script file.
> >
> > Await your help at the earliest Please.
> >
> > Thankyou
> >
> >
> >
> > --
> > *Regards,*
> > *Rahul Suresh*
> > *Research Scholar*
> > *Bharathiar University*
> > *Coimbatore*
> > --
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