[gmx-users] Fwd: Error-File must be an ascii script

[Mark Abraham]

Hi,

No, because I can neither see your script nor read your documentation :-)

Mark

On Tue, 15 Nov 2016 09:09 RAHUL SURESH <drrahulsuresh at gmail.com> wrote:

> Thank you. Let me check my cluster documentation. Anyway you can help me to
> correct my script?
>
> On Tue, 15 Nov 2016 at 1:35 PM, Mark Abraham <mark.j.abraham at gmail.com>
> wrote:
>
> > Hi,
> >
> > The error message is probably exactly right - you've incorrectly
> specified
> > the required argument to mpirun -np. This is not a gromacs problem -
> check
> > your script and consult your cluster's documentation.
> >
> > Mark
> >
> > On Tue, 15 Nov 2016 05:59 RAHUL SURESH <drrahulsuresh at gmail.com> wrote:
> >
> > > I want to run my .tpr file in cluster. I have my script file and tpr
> file
> > > in a separate folder  in cluster. But it ends up with the error
> > >
> > > */var/spool/torque/mom_priv/jobs/25552.ramanujam.hpc.org.SC
> > > <http://25552.ramanujam.hpc.org.SC>: line 8: 10: command not found*
> > >
> > >
> >
> *----------------------------------------------------------------------------*
> > > *Open MPI has detected that a parameter given to a command line*
> > > *option does not match the expected format:*
> > >
> > > *  Option: np*
> > > *  Param:  gmx_mpi*
> > >
> > > *This is frequently caused by omitting to provide the parameter*
> > > *to an option that requires one. Please check the command line and try
> > > again.*
> > >
> > >
> >
> *----------------------------------------------------------------------------*
> > >
> > >
> > > here i have attached my script file.
> > >
> > > Await your help at the earliest Please.
> > >
> > > Thankyou
> > >
> > >
> > >
> > > --
> > > *Regards,*
> > > *Rahul Suresh*
> > > *Research Scholar*
> > > *Bharathiar University*
> > > *Coimbatore*
> > > --
> > > Gromacs Users mailing list
> > >
> > > * Please search the archive at
> > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> > > posting!
> > >
> > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> > >
> > > * For (un)subscribe requests visit
> > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> > > send a mail to gmx-users-request at gromacs.org.
> > --
> > Gromacs Users mailing list
> >
> > * Please search the archive at
> > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> > posting!
> >
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >
> > * For (un)subscribe requests visit
> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> > send a mail to gmx-users-request at gromacs.org.
> >
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or
> send a mail to gmx-users-request at gromacs.org.
>