[gmx-users] Fwd: Error-File must be an ascii script

[Mark Abraham]

Hi,

The list can't take attachments, so we can't see your script. You need to
find out how to call the mpirun you're expected to use  - that's a problem
you and every other user of your cluster needs solved, so please go and ask
someone who can simultaneously solve the problem for you and for everyone
else on the cluster. :-)

Mark

On Tue, Nov 15, 2016 at 12:12 PM RAHUL SURESH <drrahulsuresh at gmail.com>
wrote:

> Hi... this s my script file. And I am totally unaware of my cluster
> documentation
>
> On Tue, Nov 15, 2016 at 1:40 PM, Mark Abraham <mark.j.abraham at gmail.com>
> wrote:
>
> > Hi,
> >
> > No, because I can neither see your script nor read your documentation :-)
> >
> > Mark
> >
> > On Tue, 15 Nov 2016 09:09 RAHUL SURESH <drrahulsuresh at gmail.com> wrote:
> >
> > > Thank you. Let me check my cluster documentation. Anyway you can help
> me
> > to
> > > correct my script?
> > >
> > > On Tue, 15 Nov 2016 at 1:35 PM, Mark Abraham <mark.j.abraham at gmail.com
> >
> > > wrote:
> > >
> > > > Hi,
> > > >
> > > > The error message is probably exactly right - you've incorrectly
> > > specified
> > > > the required argument to mpirun -np. This is not a gromacs problem -
> > > check
> > > > your script and consult your cluster's documentation.
> > > >
> > > > Mark
> > > >
> > > > On Tue, 15 Nov 2016 05:59 RAHUL SURESH <drrahulsuresh at gmail.com>
> > wrote:
> > > >
> > > > > I want to run my .tpr file in cluster. I have my script file and
> tpr
> > > file
> > > > > in a separate folder  in cluster. But it ends up with the error
> > > > >
> > > > > */var/spool/torque/mom_priv/jobs/25552.ramanujam.hpc.org.SC
> > > > > <http://25552.ramanujam.hpc.org.SC>: line 8: 10: command not
> found*
> > > > >
> > > > >
> > > >
> > > *-----------------------------------------------------------
> > -----------------*
> > > > > *Open MPI has detected that a parameter given to a command line*
> > > > > *option does not match the expected format:*
> > > > >
> > > > > *  Option: np*
> > > > > *  Param:  gmx_mpi*
> > > > >
> > > > > *This is frequently caused by omitting to provide the parameter*
> > > > > *to an option that requires one. Please check the command line and
> > try
> > > > > again.*
> > > > >
> > > > >
> > > >
> > > *-----------------------------------------------------------
> > -----------------*
> > > > >
> > > > >
> > > > > here i have attached my script file.
> > > > >
> > > > > Await your help at the earliest Please.
> > > > >
> > > > > Thankyou
> > > > >
> > > > >
> > > > >
> > > > > --
> > > > > *Regards,*
> > > > > *Rahul Suresh*
> > > > > *Research Scholar*
> > > > > *Bharathiar University*
> > > > > *Coimbatore*
> > > > > --
> > > > > Gromacs Users mailing list
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> --
> *Regards,*
> *Rahul Suresh*
> *Research Scholar*
> *Bharathiar University*
> *Coimbatore*
> --
> Gromacs Users mailing list
>
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