[gmx-users] Atom type 'OM' not found

Sotirios Dionysios I. Papadatos si.papadatos at edu.cut.ac.cy
Thu Sep 8 18:24:42 CEST 2016

Maybe your residue has an atom name that is not defined as AMBER 03 ff expects it to. Check the f directory to see how TYR has the atom names defined.

From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> on behalf of LAXMAN KUMAR <gromacs2016 at gmail.com>
Sent: Thursday, September 8, 2016 1:03:20 PM
To: gmx-users at gromacs.org
Subject: [gmx-users] Atom type 'OM' not found

hello users,
I have done a pdb2gmx of a protein using force field.

force field    -  *AMBER 03*
water model -* SPC*

Here is the error:

Fatal error:
*Atom type* OM (residue TYS) not found in atomtype database
Gromacs Users mailing list

* Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!

* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-request at gromacs.org.

More information about the gromacs.org_gmx-users mailing list