[gmx-users] Regarding calculation of angles
Dilip H N
cy16f01.dilip at nitk.edu.in
Sun Apr 9 18:19:34 CEST 2017
I have ran a amino acid simulation, and i want to calculate the angle
between the atoms in amino acid molecule. how can i calculate it..??
gmx angle [-f [<.xtc/.trr/...>]] [-n [<.ndx>]] [-od [<.xvg>]]......
1] here what index does it refer to .?? is it similar to the the RDF
2] how can i make these indexes...??
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