[gmx-users] Regarding calculation of angles

[Dilip H N]

Suppose for eg., in glycine how can i calculate the angle between nitrogen
and hydrogen attached to it, angle between C alpha and H alpha etc.,



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On Sun, Apr 9, 2017 at 9:49 PM, Dilip H N <cy16f01.dilip at nitk.edu.in> wrote:

> Hello,
> I have ran a amino acid simulation, and i want to calculate the angle
> between the atoms in amino acid molecule. how can i calculate it..??
>
> gmx angle [-f [<.xtc/.trr/...>]] [-n [<.ndx>]] [-od [<.xvg>]]......
>
> 1] here what index does it refer to .?? is it similar to the the RDF
> indexing ..??
>
> 2] how can i make these indexes...??
>
> Thank you
> --
> With Best Regards,
>
> DILIP.H.N
> Ph.D Student
>
>
>
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-- 
With Best Regards,

DILIP.H.N
Ph.D Student