[gmx-users] Regarding analysing cos theta distribution functions

[Dilip H N]

gmx sorient -f .xtc/trr -s .tpr -n .ndx...

How to make these indexes for this case..?? what are the atoms/groups
that i need to consider for

indexing in this case..




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On Wed, Apr 12, 2017 at 9:57 AM, Dilip H N <cy16f01.dilip at nitk.edu.in>
wrote:

> Hello,
> 1] I want to calculate  cos theta distributions (eg.,cos theta
> distributions of hydrogen's of water in first hydration shell layer of
> amino acid)..??
> 2] and how can i analyze the graph ..??
> --
> With Best Regards,
>
> DILIP.H.N
> Ph.D Student
>
>
>
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-- 
With Best Regards,

DILIP.H.N
Ph.D Student