[gmx-users] Regarding analysing cos theta distribution functions

[Jonathan Saboury]

For making .ndx files look at the following:
http://manual.gromacs.org/programs/gmx-make_ndx.html

Best of luck,
Jonathan

On Tue, Apr 11, 2017 at 10:26 PM, Dilip H N <cy16f01.dilip at nitk.edu.in>
wrote:

> gmx sorient -f .xtc/trr -s .tpr -n .ndx...
>
> How to make these indexes for this case..?? what are the atoms/groups
> that i need to consider for
>
> indexing in this case..
>
>
>
>
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> referral=cy16f01.dilip at nitk.edu.in&idSignature=22>
>
> On Wed, Apr 12, 2017 at 9:57 AM, Dilip H N <cy16f01.dilip at nitk.edu.in>
> wrote:
>
> > Hello,
> > 1] I want to calculate  cos theta distributions (eg.,cos theta
> > distributions of hydrogen's of water in first hydration shell layer of
> > amino acid)..??
> > 2] and how can i analyze the graph ..??
> > --
> > With Best Regards,
> >
> > DILIP.H.N
> > Ph.D Student
> >
> >
> >
> >   <https://mailtrack.io/> Sent with Mailtrack
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> referral=cy16f01.dilip at nitk.edu.in&idSignature=22>
> >
>
>
>
> --
> With Best Regards,
>
> DILIP.H.N
> Ph.D Student
> --
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