[gmx-users] Plotting area per lipid

[Justin Lemkul]

On 4/20/17 8:11 PM, Poncho Arvayo Zatarain wrote:
>
>
> Hello gromacs users: I have the area per lipids for my dppc-dppe-protein
> membrane. But i want to plot the area per lipid vs time of simulation. When i
> use GridMAT it appears by residue. Can i still use this program to plot rea
> per lipid vs time of simulation? How that works? I all still with aplvoro in
> command terminal and doesn´t work it.
>

GridMAT-MD gives you a text file with the APL per residue.  Just average them 
and you have a result for a given frame.  This is a trivial scripting exercise.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================